JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSF1_chr1_109905849_109935992	1/0	c0012	1665	3	1	1	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0013	1666	2	2	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0014	1665	2	2	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0015	1665	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0016	1666	1	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0017	1665	1	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0018	1665	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0019	1665	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0020	1666	1	0	0	0	0	1	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0021	1666	1	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0022	1665	1	1	0	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0023	1665	1	0	0	0	0	1	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0024	1666	1	0	1	0	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF1_chr1_109905849_109935992	0/0	c0025	1666	1	0	0	1	0	0	copy fasta	CSF1	chr1	109905849	109935992
CSF2RA_chrX_1263814_1314935	1/0	c0001	1203	81	8	23	33	1	15	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/1	c0002	1203	28	4	9	10	0	4	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0003	1203	18	14	1	2	0	1	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0004	1203	6	5	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0005	1203	3	3	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0006	1203	3	3	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0007	1203	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0008	1203	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0009	1203	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0010	1220	2	2	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0011	1206	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0012	1205	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0013	1203	1	0	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0014	1203	1	1	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0015	1203	1	0	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0016	1220	1	1	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0017	1203	1	0	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0018	1203	1	0	1	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0019	1203	1	1	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0020	1203	1	1	0	0	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0021	1202	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RA_chrX_1263814_1314935	0/0	c0022	1203	1	0	0	1	0	0	copy fasta	CSF2RA	chrX	1263814	1314935
CSF2RB_chr22_36908628_36945439	0/0	c0001	2694	176	9	52	95	4	16	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0002	2694	51	20	7	6	5	13	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	1/0	c0003	2694	49	19	12	10	4	3	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0004	2694	9	7	0	0	1	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0005	2694	8	7	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0006	2694	7	7	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0007	2694	7	6	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0008	2694	6	3	0	0	1	2	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0009	2694	5	0	0	1	0	4	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0010	2694	4	4	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0011	2694	3	3	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0012	2694	3	3	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0013	2694	3	0	1	0	1	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0014	2694	2	1	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439