JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSF2RB_chr22_36908628_36945439	0/0	c0015	2694	2	0	0	1	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0016	2694	2	0	0	0	0	2	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0017	2694	2	1	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0018	2694	2	2	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0019	2694	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0020	2694	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0021	2694	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0022	2694	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0023	2694	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0024	2694	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0025	2694	1	0	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/1	c0026	2694	1	0	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0027	2694	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0028	2694	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0029	2694	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0030	2694	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0031	2694	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0032	2694	1	0	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0033	2694	1	0	1	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0034	2694	1	1	0	0	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0035	2694	1	0	0	0	0	1	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0036	2694	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2RB_chr22_36908628_36945439	0/0	c0037	2694	1	0	0	1	0	0	copy fasta	CSF2RB	chr22	36908628	36945439
CSF2_chr5_132068789_132081170	1/1	c0001	435	245	57	48	96	12	30	copy fasta	CSF2	chr5	132068789	132081170
CSF2_chr5_132068789_132081170	0/0	c0002	435	196	34	28	114	4	16	copy fasta	CSF2	chr5	132068789	132081170
CSF2_chr5_132068789_132081170	0/0	c0003	435	6	4	2	0	0	0	copy fasta	CSF2	chr5	132068789	132081170
CSF2_chr5_132068789_132081170	0/0	c0004	435	3	1	2	0	0	0	copy fasta	CSF2	chr5	132068789	132081170
CSF2_chr5_132068789_132081170	0/0	c0005	435	2	2	0	0	0	0	copy fasta	CSF2	chr5	132068789	132081170
CSF3R_chr1_36461043_36487913	1/1	c0001	2511	175	26	40	92	7	8	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0002	2511	109	19	5	69	3	13	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0003	2511	76	20	9	26	4	17	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0004	2511	23	14	6	0	2	1	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0005	2511	6	6	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0006	2511	5	5	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0007	2511	3	3	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0008	2511	3	0	0	2	0	1	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0009	2511	2	0	0	0	2	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0010	2511	2	0	0	2	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0011	2511	2	0	2	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0012	2511	1	0	0	1	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0013	2511	1	0	0	1	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0014	2511	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0015	2511	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0016	2511	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0017	2511	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0018	2511	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0019	2511	1	0	0	1	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0020	2511	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0021	2511	1	1	0	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0022	2511	1	0	0	1	0	0	copy fasta	CSF3R	chr1	36461043	36487913