JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSF3R_chr1_36461043_36487913	0/0	c0023	2511	1	0	0	1	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0024	2511	1	0	1	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3R_chr1_36461043_36487913	0/0	c0025	2511	1	0	1	0	0	0	copy fasta	CSF3R	chr1	36461043	36487913
CSF3_chr17_40010440_40022813	1/1	c0001	615	282	73	42	128	11	26	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	c0002	615	137	7	28	77	5	20	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	c0003	615	6	6	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	c0004	615	4	4	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	c0005	615	3	3	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	c0006	615	1	0	0	1	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSF3_chr17_40010440_40022813	0/0	c0007	615	1	1	0	0	0	0	copy fasta	CSF3	chr17	40010440	40022813
CSGALNACT1_chr8_19399161_19762277	0/0	c0001	1599	84	7	20	41	6	10	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0002	1599	63	29	19	3	5	7	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	1/1	c0003	1599	49	25	4	5	5	8	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0004	1599	7	1	0	2	0	4	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0005	1599	6	6	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0006	1599	3	0	0	3	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0007	1599	3	0	2	0	0	1	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0008	1599	3	0	0	3	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0009	1599	3	0	0	3	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0010	1599	2	0	0	2	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0011	1599	2	0	2	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0012	1599	2	2	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0013	1599	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0014	1599	1	0	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0015	1599	1	0	0	1	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0016	1599	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0017	1599	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0018	1599	1	0	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0019	1599	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0020	1599	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0021	1599	1	0	1	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0022	1599	1	1	0	0	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT1_chr8_19399161_19762277	0/0	c0023	1599	1	0	0	1	0	0	copy fasta	CSGALNACT1	chr8	19399161	19762277
CSGALNACT2_chr10_43133445_43190302	1/0	c0001	1629	312	83	52	138	9	29	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/1	c0002	1629	66	1	17	33	5	9	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	c0003	1629	7	1	2	0	0	4	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	c0004	1629	5	4	1	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	c0005	1629	3	2	1	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	c0006	1629	2	1	1	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	c0007	1629	1	0	0	1	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	c0008	1629	1	1	0	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSGALNACT2_chr10_43133445_43190302	0/0	c0009	1629	1	1	0	0	0	0	copy fasta	CSGALNACT2	chr10	43133445	43190302
CSH1_chr17_63889918_63901574	0/1	c0001	654	383	70	62	190	14	46	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	1/0	c0002	654	23	0	19	0	1	2	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	c0003	654	8	8	0	0	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	c0004	654	4	4	0	0	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	c0005	654	3	3	0	0	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	c0006	654	2	2	0	0	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	c0007	654	2	1	1	0	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH1_chr17_63889918_63901574	0/0	c0008	654	2	0	0	1	1	0	copy fasta	CSH1	chr17	63889918	63901574