JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSH1_chr17_63889918_63901574	0/0	c0009	654	1	0	0	1	0	0	copy fasta	CSH1	chr17	63889918	63901574
CSH2_chr17_63867016_63878677	0/0	c0000	0	1	0	0	0	1	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0001	654	352	77	60	157	15	43	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0002	654	29	0	2	27	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0003	654	12	12	0	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0004	654	9	0	0	6	0	3	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0005	654	1	0	1	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0006	654	1	0	0	1	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0007	654	1	0	0	1	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0008	654	1	0	1	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0009	654	1	0	0	1	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0010	654	1	1	0	0	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSH2_chr17_63867016_63878677	0/0	c0011	654	1	0	0	1	0	0	copy fasta	CSH2	chr17	63867016	63878677
CSHL1_chr17_63904608_63916258	1/1	c0001	669	262	55	50	116	11	28	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0002	669	128	6	20	82	7	13	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0003	669	17	15	2	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0004	669	10	10	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0005	669	4	0	0	4	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0006	669	4	4	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0007	669	2	0	0	1	0	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0008	669	2	0	0	1	0	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0009	669	2	2	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0010	669	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0011	669	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0012	669	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0013	669	1	0	1	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0014	669	1	0	0	0	0	1	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0015	669	1	1	0	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSHL1_chr17_63904608_63916258	0/0	c0016	669	1	0	1	0	0	0	copy fasta	CSHL1	chr17	63904608	63916258
CSKMT_chr11_62660312_62673108	1/1	c0001	723	314	84	60	126	13	29	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	c0002	723	43	4	18	11	1	9	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	c0003	723	1	0	0	1	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	c0004	723	1	0	0	0	0	1	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	c0005	723	1	0	0	1	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	c0006	723	1	0	0	1	0	0	copy fasta	CSKMT	chr11	62660312	62673108
CSKMT_chr11_62660312_62673108	0/0	c0007	723	1	0	0	0	0	1	copy fasta	CSKMT	chr11	62660312	62673108
CSK_chr15_74777080_74808197	1/1	c0001	1353	251	59	47	111	10	22	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0002	1353	58	4	7	30	3	14	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0003	1353	47	3	1	38	0	5	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0004	1353	14	14	0	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0005	1353	14	0	1	11	1	1	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0006	1353	4	3	1	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0007	1353	3	2	1	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0008	1353	1	1	0	0	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0009	1353	1	0	0	1	0	0	copy fasta	CSK	chr15	74777080	74808197
CSK_chr15_74777080_74808197	0/0	c0010	1353	1	0	0	1	0	0	copy fasta	CSK	chr15	74777080	74808197
CSMD1_chr8_2930361_4999914	0/0	c0001	10695	3	0	0	0	0	3	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0002	10695	3	1	0	1	0	1	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0003	10695	3	0	2	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0004	10695	2	2	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914