JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSMD1_chr8_2930361_4999914	0/0	c0105	10695	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0106	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0107	10695	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0108	10695	1	0	1	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0109	10695	1	0	0	1	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0110	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0111	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0112	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0113	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0114	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0115	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD1_chr8_2930361_4999914	0/0	c0116	10695	1	1	0	0	0	0	copy fasta	CSMD1	chr8	2930361	4999914
CSMD2_chr1_33508998_34170230	0/0	c0001	10896	5	0	3	0	2	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0002	10896	3	1	2	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0003	10896	2	0	1	0	0	1	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0004	10896	2	0	2	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	1/0	c0005	10896	2	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/1	c0006	10896	2	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0007	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0008	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0009	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0010	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0011	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0012	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0013	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0014	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0015	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0016	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0017	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0018	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0019	10896	1	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0020	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0021	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0022	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0023	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0024	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0025	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0026	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0027	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0028	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0029	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0030	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0031	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0032	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0033	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0034	10896	1	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0035	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0036	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0037	10896	1	1	0	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0038	10896	1	0	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230