JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
CSMD2_chr1_33508998_34170230	0/0	c0039	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0040	10896	1	0	0	0	1	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0041	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0042	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0043	10896	1	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0044	10896	1	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0045	10896	1	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0046	10896	1	0	1	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0047	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0048	10896	1	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0049	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0050	10896	1	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0051	10896	1	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0052	10896	1	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0053	10896	1	1	0	0	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0054	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0055	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD2_chr1_33508998_34170230	0/0	c0056	10896	1	0	0	1	0	copy fasta	CSMD2	chr1	33508998	34170230
CSMD3_chr8_112217928_113441939	0/0	c0001	11124	18	12	4	2	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	1/1	c0002	11124	11	2	2	2	3	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0003	11124	6	3	3	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0004	11124	5	1	2	2	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0005	11124	4	0	1	1	2	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0006	11124	3	1	0	2	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0007	11124	2	1	0	0	1	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0008	11124	2	2	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0009	11124	2	2	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0010	11124	2	2	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0011	11124	1	0	0	1	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0012	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0013	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0014	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0015	11124	1	0	1	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0016	11124	1	0	0	1	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0017	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0018	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0019	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0020	11124	1	0	0	0	1	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0021	11124	1	0	0	0	1	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0022	11124	1	0	1	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0023	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0024	11124	1	0	1	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0025	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0026	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0027	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0028	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0029	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0030	11124	1	0	1	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0031	11124	1	0	0	1	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0032	11124	1	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939