JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSMD3_chr8_112217928_113441939	0/0	c0033	11124	1	0	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0034	11124	1	0	1	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSMD3_chr8_112217928_113441939	0/0	c0035	11124	1	1	0	0	0	0	copy fasta	CSMD3	chr8	112217928	113441939
CSN1S1_chr4_69926068_69951574	0/1	c0001	1747	220	30	34	123	10	22	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0002	1749	87	11	20	36	6	14	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0003	1749	36	0	11	20	1	4	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0004	1749	22	3	3	15	0	1	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0005	1749	18	1	2	15	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	1/0	c0006	1749	15	13	0	1	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0007	1747	12	12	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0008	1747	8	7	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0009	1747	6	6	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0010	1749	4	3	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0011	1749	2	2	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0012	1749	2	0	0	0	0	2	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0013	1747	2	0	0	2	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0014	1747	2	1	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0015	1747	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0016	1747	1	0	0	0	1	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0017	1747	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0018	1747	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0019	1747	1	0	0	1	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0020	1747	1	0	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0021	1749	1	0	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0022	1747	1	0	0	1	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0023	1747	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0024	1747	1	1	0	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0025	1749	1	0	0	0	0	1	copy fasta	CSN1S1	chr4	69926068	69951574
CSN1S1_chr4_69926068_69951574	0/0	c0026	1693	1	0	1	0	0	0	copy fasta	CSN1S1	chr4	69926068	69951574
CSN2_chr4_69950256_69970728	1/1	c0001	681	439	90	73	219	16	39	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	c0002	681	3	3	0	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	c0003	681	3	0	3	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	c0004	681	1	1	0	0	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	c0005	681	1	0	0	1	0	0	copy fasta	CSN2	chr4	69950256	69970728
CSN2_chr4_69950256_69970728	0/0	c0006	681	1	0	0	0	0	1	copy fasta	CSN2	chr4	69950256	69970728
CSN3_chr4_70237597_70256432	1/0	c0001	549	208	61	31	85	7	23	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/1	c0002	549	99	2	8	75	4	9	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0003	549	92	8	15	61	1	7	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0004	549	32	13	15	0	1	3	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0005	549	21	5	5	6	3	2	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0006	549	4	4	0	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0007	549	2	0	0	2	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0008	549	1	0	0	1	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0009	549	1	0	1	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0010	549	1	0	0	1	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0011	549	1	0	1	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0012	549	1	0	0	1	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSN3_chr4_70237597_70256432	0/0	c0013	549	1	1	0	0	0	0	copy fasta	CSN3	chr4	70237597	70256432
CSNK1A1L_chr13_37098259_37110664	0/0	c0001	1014	218	40	33	112	10	23	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	1/1	c0002	1014	135	37	31	41	4	20	copy fasta	CSNK1A1L	chr13	37098259	37110664