JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSNK1A1L_chr13_37098259_37110664	0/0	c0003	1014	30	3	7	16	3	1	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0004	1011	5	5	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0005	1014	4	0	0	4	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0006	1014	3	0	0	3	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0007	1014	3	2	1	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0008	1014	2	2	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0009	1014	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0010	1014	1	0	0	0	1	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0011	1014	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1L_chr13_37098259_37110664	0/0	c0012	1014	1	1	0	0	0	0	copy fasta	CSNK1A1L	chr13	37098259	37110664
CSNK1A1_chr5_149487982_149556439	1/1	c0001	1014	388	96	66	181	11	32	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	c0002	1014	1	0	0	0	1	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1A1_chr5_149487982_149556439	0/0	c0003	1014	1	0	0	1	0	0	copy fasta	CSNK1A1	chr5	149487982	149556439
CSNK1D_chr17_82237667_82278700	1/1	c0001	1248	307	87	63	99	15	41	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	c0002	1248	8	6	2	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	c0003	1248	2	0	1	0	0	1	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	c0004	1248	1	0	0	1	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	c0005	1248	1	0	0	0	1	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1D_chr17_82237667_82278700	0/0	c0006	1248	1	1	0	0	0	0	copy fasta	CSNK1D	chr17	82237667	82278700
CSNK1E_chr22_38285691_38322433	1/1	c0001	1251	374	86	68	160	14	44	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	c0002	1251	14	0	0	14	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	c0003	1251	10	10	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	c0004	1251	6	0	2	4	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	c0005	1251	4	4	0	0	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	c0006	1251	2	0	0	0	0	2	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1E_chr22_38285691_38322433	0/0	c0007	1251	2	0	0	2	0	0	copy fasta	CSNK1E	chr22	38285691	38322433
CSNK1G1_chr15_64160525_64361173	0/1	c0001	1269	116	69	9	21	2	14	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	1/0	c0002	1269	46	1	12	19	3	10	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	c0003	1269	11	11	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	c0004	1269	1	1	0	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	c0005	1269	1	0	0	0	1	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G1_chr15_64160525_64361173	0/0	c0006	1269	1	0	1	0	0	0	copy fasta	CSNK1G1	chr15	64160525	64361173
CSNK1G2_chr19_1936172_1986338	1/1	c0001	1248	297	52	58	133	13	39	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0002	1248	59	36	1	11	3	8	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0003	1248	16	2	7	7	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0004	1248	2	1	1	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0005	1248	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0006	1248	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0007	1248	1	0	0	0	0	1	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0008	1248	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0009	1248	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0010	1248	1	0	0	1	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0011	1248	1	1	0	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G2_chr19_1936172_1986338	0/0	c0012	1248	1	0	1	0	0	0	copy fasta	CSNK1G2	chr19	1936172	1986338
CSNK1G3_chr5_123507177_123622049	1/1	c0001	1371	293	91	62	108	12	18	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK1G3_chr5_123507177_123622049	0/0	c0002	1371	1	1	0	0	0	0	copy fasta	CSNK1G3	chr5	123507177	123622049
CSNK2A1_chr20_467498_548790	1/1	c0001	1176	312	91	60	111	14	34	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	c0002	1176	2	2	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	c0003	1176	1	0	0	1	0	0	copy fasta	CSNK2A1	chr20	467498	548790
CSNK2A1_chr20_467498_548790	0/0	c0004	1176	1	1	0	0	0	0	copy fasta	CSNK2A1	chr20	467498	548790