JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSNK2A2_chr16_58152907_58203106	1/1	c0001	1053	392	90	61	179	16	44	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	c0002	1053	5	0	0	5	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	c0003	1053	2	0	0	2	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A2_chr16_58152907_58203106	0/0	c0004	1043	1	0	1	0	0	0	copy fasta	CSNK2A2	chr16	58152907	58203106
CSNK2A3_chr11_11346942_11358250	0/1	c0001	1176	179	11	36	95	10	26	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0002	1176	109	15	21	64	1	8	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0003	1176	100	26	17	47	3	7	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	1/0	c0004	1176	23	21	0	0	1	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0005	1176	10	9	1	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0006	1176	8	1	2	1	1	3	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0007	1176	3	3	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0008	1176	2	2	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0009	1176	2	0	0	0	0	2	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0010	1176	2	0	0	2	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0011	1176	2	1	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0012	1176	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0013	1176	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0014	1176	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0015	1176	1	0	1	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0016	1176	1	0	0	1	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0017	1162	1	0	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0018	1176	1	0	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0019	1176	1	0	0	0	0	1	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0020	1176	1	0	0	1	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0021	1176	1	0	0	1	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0022	1176	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2A3_chr11_11346942_11358250	0/0	c0023	1176	1	1	0	0	0	0	copy fasta	CSNK2A3	chr11	11346942	11358250
CSNK2B_chr6_31661080_31675067	0/1	c0001	648	276	51	51	114	16	43	copy fasta	CSNK2B	chr6	31661080	31675067
CSNK2B_chr6_31661080_31675067	0/0	c0002	648	145	39	27	72	2	5	copy fasta	CSNK2B	chr6	31661080	31675067
CSNKA2IP_chr3_88333456_88472594	0/1	c0001	2205	176	12	19	118	7	19	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	1/0	c0002	2205	57	28	14	9	1	4	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0003	2205	46	10	2	29	0	5	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0004	2205	42	0	21	16	1	4	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0005	2205	14	7	4	0	1	2	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0006	2205	10	10	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0007	2204	7	0	6	0	1	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0008	2205	5	4	1	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0009	2205	3	3	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0010	2205	3	0	0	3	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0011	2205	3	3	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0012	2205	2	0	0	2	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0013	2205	2	0	0	0	0	2	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0014	2205	2	0	0	2	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0015	2205	2	2	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0016	2205	1	1	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0017	2205	1	0	1	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0018	2205	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0019	2205	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0020	2205	1	0	0	0	0	1	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0021	2205	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594