JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSNKA2IP_chr3_88333456_88472594	0/0	c0022	2205	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0023	2205	1	0	0	0	0	1	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0024	2205	1	1	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0025	2205	1	0	0	0	1	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0026	2202	1	0	0	1	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSNKA2IP_chr3_88333456_88472594	0/0	c0027	2205	1	1	0	0	0	0	copy fasta	CSNKA2IP	chr3	88333456	88472594
CSPG4_chr15_75669322_75717848	1/0	c0001	6969	184	41	26	89	6	21	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/1	c0002	6969	62	4	25	19	4	9	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0003	6969	20	0	0	20	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0004	6969	15	2	10	0	3	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0005	6969	10	1	5	0	0	4	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0006	6969	8	0	0	8	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0007	6969	7	6	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0008	6969	7	0	1	6	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0009	6969	6	6	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0010	6969	3	3	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0011	6969	3	1	0	0	2	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0012	6969	3	3	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0013	6969	3	2	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0014	6969	2	0	0	2	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0015	6969	2	0	1	0	0	1	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0016	6969	2	0	0	2	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0017	6969	2	0	2	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0018	6969	2	0	2	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0019	6969	2	2	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0020	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0021	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0022	6969	1	0	0	0	1	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0023	6969	1	0	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0024	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0025	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0026	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0027	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0028	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0029	6969	1	0	0	0	0	1	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0030	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0031	6969	1	0	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0032	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0033	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0034	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0035	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0036	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0037	6969	1	0	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0038	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0039	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0040	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0041	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0042	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0043	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0044	6969	1	0	0	1	0	0	copy fasta	CSPG4	chr15	75669322	75717848