JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSPG4_chr15_75669322_75717848	0/0	c0045	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0046	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0047	6969	1	0	0	0	0	1	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0048	6969	1	0	1	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0049	6969	1	0	0	0	0	1	copy fasta	CSPG4	chr15	75669322	75717848
CSPG4_chr15_75669322_75717848	0/0	c0050	6969	1	1	0	0	0	0	copy fasta	CSPG4	chr15	75669322	75717848
CSPG5_chr3_47557238_47583865	1/1	c0001	1620	184	53	36	71	2	20	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	c0002	1620	167	21	37	74	13	22	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	c0003	1620	4	4	0	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	c0004	1620	2	1	0	0	1	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	c0005	1620	2	2	0	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	c0006	1620	1	1	0	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	c0007	1620	1	0	1	0	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPG5_chr3_47557238_47583865	0/0	c0008	1620	1	0	0	1	0	0	copy fasta	CSPG5	chr3	47557238	47583865
CSPP1_chr8_67059392_67201614	1/0	c0001	3681	92	26	23	20	4	18	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0002	3681	29	17	7	1	0	4	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0003	3681	16	0	0	10	0	6	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0004	3681	8	8	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0005	3681	3	3	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0006	3681	2	2	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0007	3681	2	2	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0008	3681	2	2	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0009	3681	1	0	0	1	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0010	3681	1	1	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/1	c0011	3681	1	0	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSPP1_chr8_67059392_67201614	0/0	c0012	3681	1	1	0	0	0	0	copy fasta	CSPP1	chr8	67059392	67201614
CSRNP1_chr3_39136855_39158591	0/1	c0001	1770	154	3	41	75	8	26	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0002	1770	101	52	6	36	2	5	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	1/0	c0003	1770	53	6	6	32	2	6	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0004	1770	51	18	16	14	1	2	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0005	1770	27	6	6	9	2	4	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0006	1770	16	3	1	12	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0007	1770	10	10	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0008	1770	3	0	1	0	2	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0009	1770	3	0	2	0	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0010	1770	2	0	0	2	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0011	1770	2	0	2	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0012	1770	1	0	0	0	1	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0013	1770	1	0	0	1	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0014	1770	1	0	0	0	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0015	1770	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0016	1770	1	0	0	1	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0017	1770	1	0	0	0	0	1	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0018	1770	1	1	0	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP1_chr3_39136855_39158591	0/0	c0019	1770	1	0	1	0	0	0	copy fasta	CSRNP1	chr3	39136855	39158591
CSRNP2_chr12_51056205_51088596	1/0	c0001	1632	391	78	76	185	11	40	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/1	c0002	1632	13	10	0	0	1	1	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	c0003	1632	4	0	1	0	2	1	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	c0004	1632	4	4	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	c0005	1632	3	0	0	3	0	0	copy fasta	CSRNP2	chr12	51056205	51088596