JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSRNP2_chr12_51056205_51088596	0/0	c0006	1632	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	c0007	1632	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	c0008	1632	1	0	0	1	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	c0009	1632	1	0	1	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP2_chr12_51056205_51088596	0/0	c0010	1632	1	1	0	0	0	0	copy fasta	CSRNP2	chr12	51056205	51088596
CSRNP3_chr2_165464698_165694407	1/0	c0001	1758	140	55	28	43	1	12	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/1	c0002	1758	83	21	17	32	3	9	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0003	1758	9	7	1	0	0	1	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0004	1758	7	0	0	7	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0005	1758	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0006	1758	1	0	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0007	1758	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0008	1758	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0009	1758	1	1	0	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0010	1758	1	0	1	0	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRNP3_chr2_165464698_165694407	0/0	c0011	1758	1	0	0	1	0	0	copy fasta	CSRNP3	chr2	165464698	165694407
CSRP1_chr1_201478530_201512123	1/1	c0001	582	408	85	78	190	16	37	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	c0002	582	12	0	0	10	0	2	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	c0003	582	6	6	0	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	c0004	582	3	2	0	0	0	1	copy fasta	CSRP1	chr1	201478530	201512123
CSRP1_chr1_201478530_201512123	0/0	c0005	582	3	3	0	0	0	0	copy fasta	CSRP1	chr1	201478530	201512123
CSRP2_chr12_76853709_76884019	1/1	c0001	582	386	94	82	154	16	38	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	c0002	582	1	1	0	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP2_chr12_76853709_76884019	0/0	c0003	582	1	1	0	0	0	0	copy fasta	CSRP2	chr12	76853709	76884019
CSRP3_chr11_19177030_19206983	1/1	c0001	585	387	80	67	186	15	37	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	c0002	585	11	1	4	1	1	4	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	c0003	585	9	8	1	0	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	c0004	585	6	6	0	0	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	c0005	585	1	1	0	0	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	c0006	585	1	0	0	1	0	0	copy fasta	CSRP3	chr11	19177030	19206983
CSRP3_chr11_19177030_19206983	0/0	c0007	585	1	0	0	0	0	1	copy fasta	CSRP3	chr11	19177030	19206983
CST11_chr20_23445412_23457876	1/1	c0001	417	304	39	57	160	12	34	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0002	417	125	48	15	59	0	3	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0003	417	7	7	0	0	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0004	417	4	0	0	4	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0005	417	2	0	0	2	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0006	417	1	0	0	0	0	1	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0007	417	1	1	0	0	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0008	417	1	0	0	1	0	0	copy fasta	CST11	chr20	23445412	23457876
CST11_chr20_23445412_23457876	0/0	c0009	417	1	1	0	0	0	0	copy fasta	CST11	chr20	23445412	23457876
CST1_chr20_23742562_23755935	0/0	c0001	426	197	23	27	123	5	19	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0002	426	89	29	21	38	0	1	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/1	c0003	426	80	1	22	35	9	12	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0004	426	76	22	11	26	4	13	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0005	426	15	13	2	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0006	426	6	5	1	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0007	426	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0008	426	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0009	426	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0010	426	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935