Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCA10_chr17_69143007_69233824	0/0	c0007	4638	11	8	3	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0008	4638	9	6	3	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0009	4632	6	6	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0010	4632	3	3	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0011	4632	3	0	0	3	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0012	4632	3	0	0	3	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0013	4632	2	2	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0014	4632	2	2	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0015	4632	2	0	2	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0016	4638	2	2	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0017	4632	2	0	0	2	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0018	4632	2	1	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0019	4632	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0020	4632	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0021	4632	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0022	4632	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0023	4632	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0024	4632	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0025	4632	1	0	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0026	4632	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0027	4632	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0028	4632	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0029	4630	1	0	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0030	4632	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0031	4632	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0032	4632	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0033	4632	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0034	4632	1	0	0	0	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0035	4632	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0036	4632	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	c0037	4632	1	0	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA12_chr2_214926542_215143626	0/0	c0001	7788	21	2	5	9	1	4	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/1	c0002	7788	18	1	1	10	1	4	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0003	7788	16	2	4	9	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0004	7788	14	1	5	6	1	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0005	7788	8	7	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0006	7788	7	1	2	4	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0007	7788	7	7	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0008	7788	6	6	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0009	7788	5	0	1	4	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0010	7788	5	5	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0011	7788	5	0	3	0	0	2	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0012	7788	4	4	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0013	7788	4	4	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0014	7788	4	4	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0015	7788	3	3	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0016	7788	3	0	3	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0017	7788	3	3	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0018	7788	3	3	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	c0019	7788	3	3	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626