Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS2_chr5_179105853_179350461	0/0	c0075	3636	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0076	3636	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0077	3636	1	0	0	0	1	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0078	3636	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0079	3636	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0080	3636	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0081	3636	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0082	3657	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0083	3636	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0084	3636	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0085	3645	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0086	3645	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0087	3645	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0088	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0089	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0090	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0091	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0092	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0093	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0094	3639	1	0	0	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0095	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0096	3639	1	0	0	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0097	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0098	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0099	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0100	3639	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0101	3639	1	0	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0102	3639	1	0	0	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/1	c0103	3639	1	0	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0104	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0105	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0106	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0107	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0108	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0109	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0110	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0111	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0112	3639	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0113	3648	1	1	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS3_chr4_72275969_72574221	0/1	c0001	3618	103	34	14	44	1	9	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	1/0	c0002	3618	42	4	14	16	1	6	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0003	3618	11	11	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0004	3618	3	2	0	0	0	1	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0005	3618	3	3	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0006	3618	3	3	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0007	3618	2	2	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0008	3618	2	1	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0009	3618	2	2	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0010	3618	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0011	3618	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221