JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CST1_chr20_23742562_23755935	0/0	c0011	426	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0012	426	1	1	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0013	426	1	0	0	1	0	0	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	0/0	c0014	426	1	0	0	0	0	1	copy fasta	CST1	chr20	23742562	23755935
CST1_chr20_23742562_23755935	1/0	c0015	426	1	0	0	0	0	0	copy fasta	CST1	chr20	23742562	23755935
CST2_chr20_23818769_23831729	1/1	c0001	426	423	81	78	209	16	37	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	c0002	426	34	0	6	21	0	7	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	c0003	426	5	5	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	c0004	426	4	4	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	c0005	426	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	c0006	426	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	c0007	426	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST2_chr20_23818769_23831729	0/0	c0008	426	1	1	0	0	0	0	copy fasta	CST2	chr20	23818769	23831729
CST3_chr20_23628657_23642955	0/1	c0001	441	314	62	59	153	14	25	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	c0002	441	74	13	9	29	2	21	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	1/0	c0003	441	23	20	2	0	0	0	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	c0004	441	6	0	6	0	0	0	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	c0005	441	2	0	0	2	0	0	copy fasta	CST3	chr20	23628657	23642955
CST3_chr20_23628657_23642955	0/0	c0006	441	1	1	0	0	0	0	copy fasta	CST3	chr20	23628657	23642955
CST4_chr20_23680640_23694038	1/1	c0001	426	372	56	71	190	14	39	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0002	426	45	14	4	19	0	8	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0003	426	9	9	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0004	426	6	5	0	1	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0005	426	6	5	1	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0006	426	3	0	0	2	0	1	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0007	426	3	3	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0008	426	2	1	1	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0009	426	2	0	0	2	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0010	426	1	1	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0011	426	1	1	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0012	426	1	1	0	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST4_chr20_23680640_23694038	0/0	c0013	426	1	0	1	0	0	0	copy fasta	CST4	chr20	23680640	23694038
CST5_chr20_23870934_23884748	0/1	c0001	429	241	69	49	93	7	22	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	1/0	c0002	429	196	21	31	112	9	22	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	c0003	429	4	3	1	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	c0004	429	1	0	1	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	c0005	429	1	1	0	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	c0006	429	1	1	0	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	c0007	429	1	0	0	1	0	0	copy fasta	CST5	chr20	23870934	23884748
CST5_chr20_23870934_23884748	0/0	c0008	429	1	1	0	0	0	0	copy fasta	CST5	chr20	23870934	23884748
CST6_chr11_66007008_66018505	1/1	c0001	450	392	90	63	184	13	40	copy fasta	CST6	chr11	66007008	66018505
CST6_chr11_66007008_66018505	0/0	c0002	450	17	3	7	0	3	4	copy fasta	CST6	chr11	66007008	66018505
CST6_chr11_66007008_66018505	0/0	c0003	450	4	0	0	4	0	0	copy fasta	CST6	chr11	66007008	66018505
CST6_chr11_66007008_66018505	0/0	c0004	450	1	1	0	0	0	0	copy fasta	CST6	chr11	66007008	66018505
CST7_chr20_24944269_24964928	0/0	c0001	438	202	23	36	107	9	27	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	1/1	c0002	438	140	64	34	19	7	14	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	c0003	438	3	3	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	c0004	438	1	1	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	c0005	438	1	0	0	0	0	1	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	c0006	438	1	0	0	1	0	0	copy fasta	CST7	chr20	24944269	24964928