JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CST7_chr20_24944269_24964928	0/0	c0007	438	1	0	0	1	0	0	copy fasta	CST7	chr20	24944269	24964928
CST7_chr20_24944269_24964928	0/0	c0008	438	1	1	0	0	0	0	copy fasta	CST7	chr20	24944269	24964928
CST8_chr20_23486117_23501010	0/1	c0001	429	416	83	76	199	15	42	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	c0002	429	7	6	1	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	1/0	c0003	429	6	0	3	1	1	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	c0004	429	6	6	0	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	c0005	429	3	3	0	0	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	c0006	429	1	0	0	1	0	0	copy fasta	CST8	chr20	23486117	23501010
CST8_chr20_23486117_23501010	0/0	c0007	429	1	0	0	1	0	0	copy fasta	CST8	chr20	23486117	23501010
CST9L_chr20_23559732_23573484	1/1	c0001	444	223	68	36	88	5	24	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	c0002	444	157	15	21	98	7	16	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	c0003	444	5	5	0	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	c0004	444	4	3	1	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	c0005	444	2	0	2	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9L_chr20_23559732_23573484	0/0	c0006	444	1	1	0	0	0	0	copy fasta	CST9L	chr20	23559732	23573484
CST9_chr20_23597410_23610917	1/0	c0001	480	217	78	41	66	2	29	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/1	c0002	480	192	8	34	125	12	12	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0003	480	3	3	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0004	480	2	2	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0005	480	2	0	0	0	2	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0006	480	1	0	1	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0007	480	1	0	0	0	0	1	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0008	480	1	1	0	0	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0009	480	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0010	480	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CST9_chr20_23597410_23610917	0/0	c0011	480	1	0	0	1	0	0	copy fasta	CST9	chr20	23597410	23610917
CSTA_chr3_122320248_122346969	1/1	c0001	297	243	52	17	145	5	22	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	c0002	297	104	28	39	11	7	19	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	c0003	297	19	0	8	4	2	5	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	c0004	297	10	10	0	0	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	c0005	297	1	0	0	1	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTA_chr3_122320248_122346969	0/0	c0006	297	1	0	0	1	0	0	copy fasta	CSTA	chr3	122320248	122346969
CSTB_chr21_43768950_43781308	1/1	c0001	297	445	96	84	201	16	46	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	c0002	297	4	4	0	0	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	c0003	297	1	0	0	1	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	c0004	297	1	0	0	1	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTB_chr21_43768950_43781308	0/0	c0005	297	1	0	0	1	0	0	copy fasta	CSTB	chr21	43768950	43781308
CSTF1_chr20_56387645_56411362	1/1	c0001	1296	414	91	78	184	14	45	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	c0002	1296	3	3	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	c0003	1296	2	2	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	c0004	1296	1	0	0	0	0	1	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	c0005	1296	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF1_chr20_56387645_56411362	0/0	c0006	1296	1	1	0	0	0	0	copy fasta	CSTF1	chr20	56387645	56411362
CSTF2T_chr10_51690486_51704595	1/1	c0001	1851	244	29	61	111	10	31	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0002	1851	72	8	7	50	2	5	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0003	1851	58	32	9	15	1	1	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0004	1851	24	22	2	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0005	1836	6	0	0	6	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0006	1851	4	0	0	4	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0007	1836	4	4	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595