JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CSTF2T_chr10_51690486_51704595	0/0	c0008	1851	2	0	0	0	0	2	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0009	1851	2	0	0	0	0	2	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0010	1851	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0011	1851	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0012	1851	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0013	1851	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0014	1839	1	1	0	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0015	1851	1	0	0	0	0	1	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0016	1851	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0017	1851	1	0	0	0	1	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0018	1851	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0019	1851	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0020	1851	1	0	0	1	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2T_chr10_51690486_51704595	0/0	c0021	1854	1	0	1	0	0	0	copy fasta	CSTF2T	chr10	51690486	51704595
CSTF2_chrX_100815391_100846520	1/1	c0001	1734	289	66	48	129	10	34	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	c0002	1734	9	8	0	0	1	0	copy fasta	CSTF2	chrX	100815391	100846520
CSTF2_chrX_100815391_100846520	0/0	c0003	1734	1	0	0	1	0	0	copy fasta	CSTF2	chrX	100815391	100846520
CSTF3_chr11_33079584_33166480	1/1	c0001	2154	353	90	49	170	14	28	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/0	c0002	2154	4	0	4	0	0	0	copy fasta	CSTF3	chr11	33079584	33166480
CSTF3_chr11_33079584_33166480	0/0	c0003	2154	3	0	3	0	0	0	copy fasta	CSTF3	chr11	33079584	33166480
CSTL1_chr20_23434685_23449930	0/0	c0001	438	141	22	34	68	10	7	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	1/0	c0002	438	121	11	25	59	6	19	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0003	438	72	1	9	59	0	3	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/1	c0004	438	63	40	4	14	0	4	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0005	438	28	3	1	20	0	4	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0006	438	6	5	1	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0007	438	4	4	0	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0008	438	4	3	1	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0009	438	4	3	1	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0010	438	2	2	0	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0011	438	1	0	0	0	0	1	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0012	438	1	0	0	1	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0013	438	1	0	0	1	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0014	438	1	1	0	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0015	438	1	0	0	1	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0016	438	1	1	0	0	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTL1_chr20_23434685_23449930	0/0	c0017	438	1	0	0	1	0	0	copy fasta	CSTL1	chr20	23434685	23449930
CSTPP1_chr11_46931761_47167247	1/1	c0001	996	215	69	52	63	4	25	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0002	996	2	1	1	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0003	996	1	0	0	0	0	1	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0004	996	1	0	1	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0005	996	1	1	0	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0006	996	1	1	0	0	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0007	996	1	0	0	1	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0008	996	1	0	0	1	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CSTPP1_chr11_46931761_47167247	0/0	c0009	996	1	0	0	1	0	0	copy fasta	CSTPP1	chr11	46931761	47167247
CS_chr12_56266699_56305330	1/1	c0001	1401	294	78	65	109	12	28	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	c0002	1401	18	0	4	12	2	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	c0003	1401	2	2	0	0	0	0	copy fasta	CS	chr12	56266699	56305330
CS_chr12_56266699_56305330	0/0	c0004	1450	1	0	1	0	0	0	copy fasta	CS	chr12	56266699	56305330