JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTAG1B_chrX_154612609_154624282	0/0	c0005	543	2	2	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0006	544	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0007	543	1	0	0	0	0	1	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0008	543	1	0	0	1	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG1B_chrX_154612609_154624282	0/0	c0009	375	1	1	0	0	0	0	copy fasta	CTAG1B	chrX	154612609	154624282
CTAG2_chrX_154646977_154658579	0/0	c0001	543	137	4	21	93	6	13	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	1/0	c0002	543	128	45	26	31	7	18	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0003	543	13	0	13	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0004	543	11	10	1	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0005	543	6	6	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/1	c0006	543	4	0	0	1	0	2	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0007	543	3	3	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0008	543	2	0	0	2	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0009	543	2	2	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0010	543	1	1	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0011	544	1	0	0	1	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0012	543	1	1	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0013	543	1	1	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0014	543	1	0	1	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0015	543	1	0	0	0	0	1	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0016	549	1	0	0	1	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAG2_chrX_154646977_154658579	0/0	c0017	543	1	1	0	0	0	0	copy fasta	CTAG2	chrX	154646977	154658579
CTAGE15_chr7_143566801_143579387	0/0	c0001	2334	38	2	10	15	1	10	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0002	2334	33	3	2	28	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0003	2334	22	0	0	20	0	2	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0004	2334	13	3	5	2	0	3	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0005	2334	11	1	1	5	3	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0006	2334	7	1	2	4	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0007	2334	6	5	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0008	2334	6	6	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0009	2334	5	0	0	5	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0010	2334	5	0	4	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0011	2334	4	0	4	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0012	2334	4	0	2	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0013	2334	3	0	1	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0014	2334	3	2	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0015	2334	2	0	0	2	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0016	2334	2	0	0	2	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0017	2334	2	2	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0018	2334	2	0	0	2	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0019	2334	2	0	0	1	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0020	2334	2	0	0	0	0	2	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0021	2334	2	0	0	2	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0022	2334	2	0	1	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0023	2334	2	0	2	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0024	2334	2	2	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0025	2334	2	0	0	0	2	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0026	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0027	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0028	2334	1	0	0	0	1	0	copy fasta	CTAGE15	chr7	143566801	143579387