JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTAGE15_chr7_143566801_143579387	0/0	c0029	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0030	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0031	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0032	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0033	2334	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0034	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0035	2334	1	0	0	0	1	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0036	2334	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0037	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0038	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0039	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0040	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0041	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0042	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0043	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0044	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0045	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0046	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0047	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0048	2334	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0049	2334	1	0	0	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0050	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0051	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0052	2334	1	0	0	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0053	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0054	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0055	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0056	2334	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0057	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0058	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0059	2334	1	0	0	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0060	2334	1	0	0	1	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0061	2334	1	0	0	0	0	1	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0062	2334	1	0	1	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE15_chr7_143566801_143579387	0/0	c0063	2334	1	1	0	0	0	0	copy fasta	CTAGE15	chr7	143566801	143579387
CTAGE1_chr18_22408599_22422915	0/0	c0001	2238	155	2	17	113	4	19	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/1	c0002	2238	113	6	18	72	6	10	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	1/0	c0003	2238	51	23	5	17	0	5	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0004	2238	25	17	2	5	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0005	2238	21	3	8	5	1	4	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0006	2238	20	6	4	2	4	4	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0007	2238	15	0	14	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0008	2238	8	5	0	1	0	2	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0009	2238	7	7	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0010	2238	7	1	0	6	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0011	2238	6	6	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0012	2238	5	4	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0013	2238	5	5	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0014	2238	5	0	4	0	1	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0015	2238	3	0	0	3	0	0	copy fasta	CTAGE1	chr18	22408599	22422915