JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTAGE1_chr18_22408599_22422915	0/0	c0016	2238	3	3	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0017	2238	3	0	2	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0018	2238	3	2	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0019	2238	2	2	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0020	2238	2	0	0	2	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0021	2238	2	0	0	2	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0022	2238	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0023	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0024	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0025	2238	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0026	2238	1	0	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0027	2238	1	0	0	0	0	1	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0028	2238	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0029	2238	1	0	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0030	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0031	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0032	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0033	2238	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0034	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0035	2238	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0036	2238	1	0	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0037	2238	1	0	1	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0038	2238	1	0	0	1	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0039	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE1_chr18_22408599_22422915	0/0	c0040	2238	1	1	0	0	0	0	copy fasta	CTAGE1	chr18	22408599	22422915
CTAGE4_chr7_144178466_144191080	0/0	c0001	2334	72	2	6	62	1	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0002	2334	68	0	15	45	2	6	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0003	2334	52	9	8	24	1	10	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0004	2334	25	5	5	3	0	12	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0005	2334	10	0	4	5	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0006	2334	9	8	1	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0007	2334	9	0	5	1	2	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0008	2334	8	0	7	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0009	2334	8	0	4	2	0	2	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0010	2334	6	0	1	5	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0011	2334	6	1	2	0	1	2	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0012	2334	5	5	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0013	2334	5	5	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0014	2334	4	0	0	2	0	2	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0015	2334	4	0	2	1	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0016	2334	4	0	0	4	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0017	2334	4	3	1	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0018	2334	4	4	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0019	2334	4	4	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0020	2334	4	0	3	0	1	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0021	2334	3	0	0	3	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0022	2334	3	0	2	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0023	2334	3	0	0	3	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0024	2334	3	3	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0025	2334	2	0	0	0	0	2	copy fasta	CTAGE4	chr7	144178466	144191080