Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS3_chr4_72275969_72574221	0/0	c0012	3618	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0013	3618	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0014	3618	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0015	3618	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0016	3618	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0017	3618	1	0	0	1	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0018	3618	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0019	3618	1	0	1	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS3_chr4_72275969_72574221	0/0	c0020	3618	1	1	0	0	0	0	copy fasta	ADAMTS3	chr4	72275969	72574221
ADAMTS4_chr1_161179302_161204054	0/0	c0001	2514	117	27	22	51	1	16	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0002	2514	104	10	13	71	3	7	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	1/0	c0003	2514	72	29	12	10	9	11	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/1	c0004	2514	36	13	3	17	1	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0005	2514	16	1	6	4	2	3	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0006	2514	6	0	0	6	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0007	2514	4	0	0	4	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0008	2514	3	3	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0009	2514	3	0	1	0	2	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0010	2514	2	2	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0011	2514	1	0	1	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0012	2514	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0013	2514	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0014	2514	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0015	2514	1	1	0	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0016	2514	1	0	1	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0017	2514	1	0	0	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0018	2514	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0019	2514	1	0	0	0	0	1	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0020	2514	1	0	1	0	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS4_chr1_161179302_161204054	0/0	c0021	2514	1	0	0	1	0	0	copy fasta	ADAMTS4	chr1	161179302	161204054
ADAMTS5_chr21_26912922_26972088	0/0	c0001	2793	115	30	13	52	4	16	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	1/0	c0002	2793	92	2	14	65	3	7	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0003	2793	38	3	5	28	2	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0004	2793	23	10	7	1	3	2	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0005	2793	22	7	9	2	2	2	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0006	2793	20	0	6	13	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0007	2793	12	0	0	12	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0008	2793	7	6	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0009	2793	7	6	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/1	c0010	2793	6	0	1	1	0	3	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0011	2793	5	0	3	0	0	2	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0012	2793	5	4	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0013	2793	5	5	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0014	2793	4	4	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0015	2793	4	4	0	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0016	2793	3	0	1	1	1	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0017	2793	2	0	1	0	0	1	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0018	2793	2	1	1	0	0	0	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0019	2793	2	0	0	0	0	2	copy fasta	ADAMTS5	chr21	26912922	26972088
ADAMTS5_chr21_26912922_26972088	0/0	c0020	2793	2	0	0	0	0	2	copy fasta	ADAMTS5	chr21	26912922	26972088