JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTAGE4_chr7_144178466_144191080	0/0	c0076	2334	1	0	0	0	0	1	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0077	2334	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0078	2334	1	0	0	1	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE4_chr7_144178466_144191080	0/0	c0079	2334	1	1	0	0	0	0	copy fasta	CTAGE4	chr7	144178466	144191080
CTAGE6_chr7_143750089_143762696	0/0	c0001	2334	30	4	4	13	2	7	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0002	2334	27	1	7	18	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0003	2334	15	6	5	1	1	2	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0004	2334	12	0	0	12	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0005	2334	7	0	0	7	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0006	2334	5	0	0	5	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0007	2334	5	0	1	4	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0008	2334	5	0	0	5	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0009	2334	4	0	0	4	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0010	2334	3	0	1	0	1	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0011	2334	3	0	0	3	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0012	2334	3	3	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0013	2334	3	0	3	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0014	2334	2	2	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0015	2334	2	0	1	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0016	2334	2	0	0	2	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0017	2334	2	0	0	2	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0018	2334	2	0	0	2	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0019	2334	2	0	2	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0020	2334	2	0	0	2	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0021	2334	2	0	0	2	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0022	2334	2	1	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0023	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0024	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0025	2334	1	0	0	0	1	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0026	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0027	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0028	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0029	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0030	2334	1	0	0	0	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0031	2334	1	0	0	0	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0032	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0033	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0034	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0035	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0036	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0037	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0038	2334	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0039	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0040	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0041	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0042	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0043	2334	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0044	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0045	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0046	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696