JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTAGE6_chr7_143750089_143762696	0/0	c0047	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0048	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0049	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0050	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0051	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0052	2334	1	0	0	0	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0053	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0054	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0055	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0056	2334	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0057	2334	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0058	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0059	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0060	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0061	2334	1	0	0	0	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0062	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0063	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0064	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0065	2334	1	0	0	0	1	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0066	2334	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0067	2334	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0068	2334	1	0	0	0	0	1	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0069	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0070	2334	1	0	0	1	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0071	2334	1	0	1	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE6_chr7_143750089_143762696	0/0	c0072	2334	1	1	0	0	0	0	copy fasta	CTAGE6	chr7	143750089	143762696
CTAGE8_chr7_144261674_144274288	0/0	c0001	2334	20	1	1	18	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0002	2334	13	0	2	6	0	5	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0003	2334	9	0	0	8	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0004	2334	6	0	2	2	2	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0005	2334	5	2	1	1	1	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0006	2334	5	0	0	3	2	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0007	2334	4	0	0	4	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0008	2334	4	0	1	3	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0009	2334	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0010	2334	3	2	0	0	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0011	2334	3	0	0	3	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0012	2334	3	0	0	3	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0013	2334	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0014	2334	3	3	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0015	2334	3	1	0	0	1	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0016	2334	3	0	1	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0017	2334	2	2	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0018	2334	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0019	2334	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0020	2334	2	0	0	0	0	2	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0021	2334	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0022	2334	2	1	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0023	2334	2	2	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0024	2334	2	0	0	2	0	0	copy fasta	CTAGE8	chr7	144261674	144274288