JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTAGE8_chr7_144261674_144274288	0/0	c0025	2334	2	2	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0026	2334	2	2	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0027	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0028	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0029	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0030	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0031	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0032	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0033	2334	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0034	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0035	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0036	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0037	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0038	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0039	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0040	2334	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0041	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0042	2334	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0043	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0044	2334	1	0	0	0	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0045	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0046	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0047	2334	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0048	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0049	2334	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0050	2334	1	0	0	0	1	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0051	2334	1	0	0	0	0	1	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0052	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0053	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0054	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0055	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0056	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0057	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0058	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0059	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0060	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0061	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0062	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0063	2334	1	0	1	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0064	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0065	2334	1	0	0	0	1	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0066	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0067	2334	1	0	0	1	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE8_chr7_144261674_144274288	0/0	c0068	2334	1	1	0	0	0	0	copy fasta	CTAGE8	chr7	144261674	144274288
CTAGE9_chr6_131703441_131716017	1/1	c0001	2334	191	25	51	77	12	24	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0002	2334	74	2	6	61	1	4	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0003	2334	43	1	3	37	0	2	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0004	2334	20	10	1	5	0	4	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0005	2334	11	11	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0006	2334	11	11	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017