JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTAGE9_chr6_131703441_131716017	0/0	c0007	2334	10	8	0	2	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0008	2334	9	5	1	0	2	1	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0009	2334	6	6	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0010	2334	6	4	1	0	0	1	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0011	2334	5	4	1	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0012	2334	5	0	1	1	1	2	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0013	2334	3	3	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0014	2334	3	3	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0015	2334	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0016	2334	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0017	2334	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0018	2334	1	0	0	1	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0019	2334	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0020	2334	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0021	2334	1	0	0	1	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0022	2334	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0023	2334	1	1	0	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0024	2334	1	0	0	1	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTAGE9_chr6_131703441_131716017	0/0	c0025	2334	1	0	1	0	0	0	copy fasta	CTAGE9	chr6	131703441	131716017
CTBP1_chr4_1206445_1254130	1/1	c0001	1290	406	91	71	186	14	42	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0002	1290	3	0	0	1	0	2	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0003	1290	2	1	1	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0004	1290	2	0	0	0	0	2	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0005	1290	2	0	2	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0006	1290	2	0	2	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0007	1290	2	0	0	2	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0008	1290	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0009	1290	1	1	0	0	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP1_chr4_1206445_1254130	0/0	c0010	1290	1	0	0	1	0	0	copy fasta	CTBP1	chr4	1206445	1254130
CTBP2_chr10_124979317_125033071	0/1	c0001	2958	105	10	19	56	4	15	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0002	2958	74	8	15	40	7	4	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	1/0	c0003	2958	40	16	6	7	0	10	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0004	2979	34	14	16	0	2	2	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0005	2979	22	0	7	15	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0006	2958	19	6	3	8	1	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0007	2958	11	8	3	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0008	2958	9	0	0	9	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0009	2958	7	7	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0010	2958	5	0	0	5	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0011	2958	4	4	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0012	2958	4	4	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0013	2958	4	3	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0014	2958	3	0	0	3	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0015	2958	3	0	0	3	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0016	2979	2	0	2	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0017	2958	2	2	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0018	2958	2	2	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0019	2958	1	0	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0020	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0021	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071