JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTBP2_chr10_124979317_125033071	0/0	c0022	2981	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0023	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0024	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0025	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0026	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0027	2958	1	0	1	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0028	2979	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0029	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0030	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0031	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0032	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0033	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0034	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0035	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0036	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0037	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0038	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0039	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0040	2958	1	0	0	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0041	2979	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0042	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0043	2979	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0044	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0045	2958	1	0	0	0	0	1	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0046	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0047	2958	1	0	0	1	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBP2_chr10_124979317_125033071	0/0	c0048	2958	1	1	0	0	0	0	copy fasta	CTBP2	chr10	124979317	125033071
CTBS_chr1_84544611_84579440	1/1	c0001	1158	154	16	31	85	7	13	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0002	1158	45	8	6	30	0	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0003	1149	40	33	4	2	0	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0004	1149	33	9	6	6	1	11	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0005	1149	25	5	6	11	1	2	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0006	1167	8	6	2	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0007	1149	6	0	2	1	2	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0008	1158	5	0	0	5	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0009	1158	5	5	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0010	1149	3	0	0	0	1	2	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0011	1149	3	1	1	0	0	1	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0012	1158	2	0	2	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0013	1158	2	0	0	0	0	2	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0014	1158	2	0	0	2	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0015	1149	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0016	1149	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0017	1158	1	0	1	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0018	1158	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0019	1158	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0020	1158	1	0	1	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTBS_chr1_84544611_84579440	0/0	c0021	1149	1	1	0	0	0	0	copy fasta	CTBS	chr1	84544611	84579440
CTC1_chr17_8219815_8253056	0/0	c0001	3654	170	14	27	117	2	10	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/1	c0002	3654	154	51	21	56	7	18	copy fasta	CTC1	chr17	8219815	8253056