JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTC1_chr17_8219815_8253056	0/0	c0003	3654	23	0	9	6	3	5	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0004	3654	11	10	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0005	3654	10	2	8	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	1/0	c0006	3654	6	0	2	0	0	3	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0007	3654	4	4	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0008	3654	3	3	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0009	3654	3	3	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0010	3654	2	0	0	2	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0011	3654	2	0	0	0	0	2	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0012	3654	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0013	3654	1	0	0	0	0	1	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0014	3654	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0015	3654	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0016	3654	1	0	0	0	0	1	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0017	3654	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0018	3654	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0019	3654	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0020	3654	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0021	3654	1	1	0	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0022	3654	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0023	3654	1	0	0	1	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0024	3654	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTC1_chr17_8219815_8253056	0/0	c0025	3654	1	0	1	0	0	0	copy fasta	CTC1	chr17	8219815	8253056
CTCFL_chr20_57492166_57530140	0/0	c0001	1992	114	23	15	65	4	7	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/1	c0002	1992	100	6	14	56	5	18	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	1/0	c0003	1992	91	4	18	47	2	19	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0004	1992	57	35	8	9	2	3	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0005	1992	9	1	0	7	0	1	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0006	1992	8	6	1	0	0	1	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0007	1992	5	0	2	0	3	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0008	1992	5	4	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0009	1992	4	3	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0010	1992	4	4	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0011	1992	3	0	2	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0012	1992	3	2	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0013	1992	2	0	1	0	0	1	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0014	1992	2	2	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0015	1992	2	2	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0016	1992	2	0	2	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0017	1992	1	1	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0018	1992	1	0	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0019	1992	1	0	0	0	1	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0020	1992	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0021	1992	1	1	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0022	1992	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0023	1992	1	0	0	0	1	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0024	1992	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0025	1992	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0026	1992	1	0	0	1	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0027	1992	1	1	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140