JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTCFL_chr20_57492166_57530140	0/0	c0028	1992	1	1	0	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCFL_chr20_57492166_57530140	0/0	c0029	1992	1	0	1	0	0	0	copy fasta	CTCFL	chr20	57492166	57530140
CTCF_chr16_67557526_67644177	1/1	c0001	2184	167	78	36	26	8	17	copy fasta	CTCF	chr16	67557526	67644177
CTCF_chr16_67557526_67644177	0/0	c0002	2184	1	0	0	0	0	1	copy fasta	CTCF	chr16	67557526	67644177
CTDNEP1_chr17_7238591_7256734	0/0	c0001	735	238	82	27	104	9	16	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	1/1	c0002	735	115	14	31	57	5	6	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDNEP1_chr17_7238591_7256734	0/0	c0003	735	45	0	14	15	4	12	copy fasta	CTDNEP1	chr17	7238591	7256734
CTDP1_chr18_79674803_79759503	0/1	c0001	2886	86	9	21	36	5	14	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0002	2886	68	7	10	39	4	8	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0003	2886	58	11	9	27	2	9	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0004	2886	33	0	5	23	3	2	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0005	2889	26	0	4	21	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	1/0	c0006	2886	22	18	3	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0007	2886	21	1	7	8	0	5	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0008	2886	8	6	2	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0009	2889	6	0	0	6	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0010	2886	5	0	3	2	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0011	2886	3	3	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0012	2889	3	0	3	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0013	2886	3	2	0	0	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0014	2886	3	3	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0015	2886	2	2	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0016	2886	2	2	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0017	2886	2	2	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0018	2886	2	1	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0019	2886	2	2	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0020	2886	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0021	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0022	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0023	2889	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0024	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0025	2886	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0026	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0027	2886	1	0	0	0	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0028	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0029	2886	1	0	0	0	0	1	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0030	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0031	2886	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0032	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0033	2886	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0034	2889	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0035	2886	1	0	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0036	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0037	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0038	2886	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0039	2886	1	0	1	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0040	2889	1	0	0	1	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0041	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDP1_chr18_79674803_79759503	0/0	c0042	2886	1	1	0	0	0	0	copy fasta	CTDP1	chr18	79674803	79759503
CTDSP1_chr2_218394868_218410941	0/1	c0001	786	193	0	50	111	8	23	copy fasta	CTDSP1	chr2	218394868	218410941