JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTNNAL1_chr9_108937577_109018499	0/0	c0003	2205	9	7	2	0	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0004	2205	2	0	0	0	0	2	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0005	2205	1	0	1	0	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0006	2205	1	0	0	1	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0007	2205	1	0	0	1	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0008	2205	1	0	0	1	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0009	2205	1	0	0	0	0	1	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNAL1_chr9_108937577_109018499	0/0	c0010	2205	1	0	0	1	0	0	copy fasta	CTNNAL1	chr9	108937577	109018499
CTNNB1_chr3_41194505_41245443	1/1	c0001	2346	298	83	48	125	12	28	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	c0002	2346	27	0	7	20	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	c0003	2346	7	7	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	c0004	2346	3	3	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	c0005	2346	3	2	1	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	c0006	2346	2	0	0	2	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	c0007	2346	1	0	0	1	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNB1_chr3_41194505_41245443	0/0	c0008	2346	1	1	0	0	0	0	copy fasta	CTNNB1	chr3	41194505	41245443
CTNNBIP1_chr1_9843276_9915269	1/1	c0001	246	307	90	56	114	12	33	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	c0002	246	1	0	0	0	0	1	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	c0003	246	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBIP1_chr1_9843276_9915269	0/0	c0004	246	1	1	0	0	0	0	copy fasta	CTNNBIP1	chr1	9843276	9915269
CTNNBL1_chr20_37689030_37877118	1/1	c0001	1692	262	82	54	82	12	30	copy fasta	CTNNBL1	chr20	37689030	37877118
CTNNBL1_chr20_37689030_37877118	0/0	c0002	1692	2	2	0	0	0	0	copy fasta	CTNNBL1	chr20	37689030	37877118
CTNNBL1_chr20_37689030_37877118	0/0	c0003	1692	2	0	0	2	0	0	copy fasta	CTNNBL1	chr20	37689030	37877118
CTNND1_chr11_57756802_57824540	0/1	c0001	2907	174	39	38	64	7	25	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0002	2907	80	13	25	24	7	11	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0003	2907	15	14	1	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0004	2907	5	5	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0005	2907	4	4	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	1/0	c0006	2907	2	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0007	2907	2	0	0	2	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0008	2907	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0009	2907	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0010	2907	1	0	0	1	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0011	2907	1	0	0	1	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0012	2907	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND1_chr11_57756802_57824540	0/0	c0013	3015	1	1	0	0	0	0	copy fasta	CTNND1	chr11	57756802	57824540
CTNND2_chr5_10966836_11909446	1/1	c0001	3678	15	11	1	1	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0002	3678	4	3	0	1	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0003	3678	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0004	3678	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0005	3678	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0006	3678	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0007	3678	1	0	1	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0008	3678	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNND2_chr5_10966836_11909446	0/0	c0009	3678	1	1	0	0	0	0	copy fasta	CTNND2	chr5	10966836	11909446
CTNS_chr17_3631760_3668103	0/1	c0001	1104	230	27	48	111	8	35	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	1/0	c0002	1104	62	31	9	16	1	4	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0003	1104	54	0	14	30	5	5	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0004	1104	14	14	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103
CTNS_chr17_3631760_3668103	0/0	c0005	1104	5	5	0	0	0	0	copy fasta	CTNS	chr17	3631760	3668103