JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTSD_chr11_1747755_1768927	0/0	c0006	1239	2	0	2	0	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	c0007	1239	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSD_chr11_1747755_1768927	0/0	c0008	1239	1	0	0	1	0	0	copy fasta	CTSD	chr11	1747755	1768927
CTSE_chr1_206004264_206028895	1/1	c0001	1191	209	36	45	84	10	32	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0002	1191	40	25	11	1	2	1	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0003	1191	16	15	1	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0004	1191	12	7	3	0	2	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0005	1191	5	5	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0006	1191	4	0	0	4	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0007	1191	3	3	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0008	1191	3	0	3	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0009	1191	2	2	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0010	1191	2	2	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0011	1191	1	0	0	0	0	1	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0012	1191	1	0	1	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0013	1191	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0014	1191	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0015	1191	1	0	0	1	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSE_chr1_206004264_206028895	0/0	c0016	1191	1	1	0	0	0	0	copy fasta	CTSE	chr1	206004264	206028895
CTSF_chr11_66558464_66573606	1/0	c0001	1455	154	14	23	93	3	20	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0002	1455	138	47	17	57	6	11	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/1	c0003	1455	83	15	16	41	5	5	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0004	1455	13	0	0	13	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0005	1455	6	5	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0006	1455	4	3	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0007	1455	3	2	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0008	1455	3	3	0	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0009	1455	2	2	0	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0010	1455	2	0	2	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0011	1455	1	0	0	1	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0012	1455	1	0	1	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0013	1455	1	1	0	0	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSF_chr11_66558464_66573606	0/0	c0014	1455	1	0	0	1	0	0	copy fasta	CTSF	chr11	66558464	66573606
CTSG_chr14_24568518_24581250	1/1	c0001	768	360	73	63	166	17	39	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0002	768	57	2	3	47	1	4	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0003	768	13	11	1	0	0	1	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0004	768	4	3	1	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0005	768	2	2	0	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0006	768	1	1	0	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0007	768	1	0	1	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0008	768	1	0	0	1	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSG_chr14_24568518_24581250	0/0	c0009	768	1	0	1	0	0	0	copy fasta	CTSG	chr14	24568518	24581250
CTSH_chr15_78916058_78950046	0/1	c0001	1008	143	46	20	65	1	10	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0002	1008	132	24	15	88	1	4	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0003	1008	83	14	22	16	7	24	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0004	1008	23	0	5	9	5	4	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0005	1008	11	0	6	5	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0006	1008	6	6	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0007	1008	5	5	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0008	1008	3	1	2	0	0	0	copy fasta	CTSH	chr15	78916058	78950046