JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTSH_chr15_78916058_78950046	0/0	c0009	1008	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0010	1008	1	0	1	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0011	1008	1	0	1	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0012	1008	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0013	1008	1	1	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	1/0	c0014	1008	1	0	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0015	1008	1	1	0	0	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSH_chr15_78916058_78950046	0/0	c0016	1008	1	0	0	1	0	0	copy fasta	CTSH	chr15	78916058	78950046
CTSK_chr1_150791208_150813260	0/1	c0001	990	377	78	54	182	16	46	copy fasta	CTSK	chr1	150791208	150813260
CTSK_chr1_150791208_150813260	1/0	c0002	990	12	11	0	0	0	0	copy fasta	CTSK	chr1	150791208	150813260
CTSK_chr1_150791208_150813260	0/0	c0003	990	2	2	0	0	0	0	copy fasta	CTSK	chr1	150791208	150813260
CTSK_chr1_150791208_150813260	0/0	c0004	990	1	1	0	0	0	0	copy fasta	CTSK	chr1	150791208	150813260
CTSL_chr9_87721119_87736469	1/1	c0001	1002	373	83	66	168	17	37	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	c0002	1002	11	0	6	0	1	4	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	c0003	1002	1	1	0	0	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	c0004	1002	1	0	0	0	0	1	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	c0005	1002	1	0	0	1	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSL_chr9_87721119_87736469	0/0	c0006	1002	1	0	0	1	0	0	copy fasta	CTSL	chr9	87721119	87736469
CTSO_chr4_155919118_155958866	0/0	c0001	966	341	74	68	143	10	46	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	c0002	966	3	3	0	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	c0003	966	2	2	0	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	c0004	966	1	1	0	0	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSO_chr4_155919118_155958866	0/0	c0005	966	1	0	0	1	0	0	copy fasta	CTSO	chr4	155919118	155958866
CTSS_chr1_150725188_150770778	1/0	c0001	996	228	61	29	105	10	22	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/1	c0002	996	110	21	18	51	5	14	copy fasta	CTSS	chr1	150725188	150770778
CTSS_chr1_150725188_150770778	0/0	c0003	996	6	0	3	0	1	2	copy fasta	CTSS	chr1	150725188	150770778
CTSV_chr9_97024677_97044142	1/1	c0001	1005	396	85	62	197	10	40	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	c0002	1005	5	5	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	c0003	1005	5	5	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	c0004	1005	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	c0005	1005	1	1	0	0	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	c0006	1005	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSV_chr9_97024677_97044142	0/0	c0007	1005	1	0	0	1	0	0	copy fasta	CTSV	chr9	97024677	97044142
CTSW_chr11_65874837_65888741	0/1	c0001	1131	243	53	48	100	13	28	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0002	1131	89	11	15	57	1	5	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	1/0	c0003	1131	18	15	2	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0004	1131	7	7	0	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0005	1131	2	0	2	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0006	1131	1	0	0	0	0	1	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0007	1131	1	1	0	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0008	1131	1	0	0	1	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0009	1131	1	0	1	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0010	1131	1	0	0	1	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0011	1131	1	1	0	0	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSW_chr11_65874837_65888741	0/0	c0012	1131	1	0	0	1	0	0	copy fasta	CTSW	chr11	65874837	65888741
CTSZ_chr20_58990185_59012254	0/0	c0001	912	306	67	53	148	10	28	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/1	c0002	912	117	22	25	41	6	22	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	c0003	912	4	4	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	c0004	912	2	0	0	2	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	c0005	912	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254