JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTSZ_chr20_58990185_59012254	0/0	c0006	912	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	c0007	912	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	c0008	912	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	c0009	912	1	1	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	0/0	c0010	912	1	0	0	1	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTSZ_chr20_58990185_59012254	1/0	c0011	912	1	0	0	0	0	0	copy fasta	CTSZ	chr20	58990185	59012254
CTTNBP2NL_chr1_112391214_112466164	0/0	c0001	1920	165	50	24	80	1	10	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/1	c0002	1920	102	8	22	61	1	9	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	1/0	c0003	1920	19	4	6	0	2	6	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0004	1920	9	8	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0005	1920	6	6	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0006	1920	4	4	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0007	1920	4	4	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0008	1920	3	0	0	3	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0009	1920	3	3	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0010	1920	2	1	1	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0011	1920	2	2	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0012	1920	1	1	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0013	1920	1	1	0	0	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0014	1920	1	0	0	0	0	1	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0015	1920	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2NL_chr1_112391214_112466164	0/0	c0016	1920	1	0	0	1	0	0	copy fasta	CTTNBP2NL	chr1	112391214	112466164
CTTNBP2_chr7_117705651_117878441	1/1	c0001	4992	140	54	37	29	3	15	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0002	4992	4	2	2	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0003	4992	3	1	1	0	1	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0004	4992	2	2	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0005	4992	2	1	1	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0006	4992	2	2	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0007	4992	1	1	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0008	4992	1	0	0	0	0	1	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0009	4992	1	0	1	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0010	4992	1	1	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0011	4992	1	0	0	0	0	1	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0012	4992	1	1	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0013	4992	1	0	0	1	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0014	4992	1	0	0	0	0	1	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0015	4992	1	1	0	0	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0016	4992	1	0	0	1	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTNBP2_chr7_117705651_117878441	0/0	c0017	4992	1	0	0	1	0	0	copy fasta	CTTNBP2	chr7	117705651	117878441
CTTN_chr11_70393529_70441575	1/1	c0001	1653	189	43	33	90	6	15	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0002	1653	56	24	13	5	3	11	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0003	1653	42	3	12	15	6	6	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0004	1653	18	18	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0005	1653	4	0	2	0	0	2	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0006	1653	2	2	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0007	1653	2	0	0	2	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0008	1653	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0009	1653	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0010	1653	1	0	0	1	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0011	1653	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575