JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTTN_chr11_70393529_70441575	0/0	c0012	1653	1	0	0	1	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0013	1653	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0014	1653	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0015	1653	1	1	0	0	0	0	copy fasta	CTTN	chr11	70393529	70441575
CTTN_chr11_70393529_70441575	0/0	c0016	1653	1	0	0	0	1	0	copy fasta	CTTN	chr11	70393529	70441575
CTU1_chr19_51092606_51113409	1/1	c0001	1047	313	69	58	144	8	32	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0002	1047	70	7	6	47	4	6	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0003	1047	25	0	5	11	4	5	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0004	1047	9	9	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0005	1048	6	2	2	2	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0006	1047	5	0	5	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0007	1048	5	0	0	5	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0008	1047	3	0	3	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0009	1047	3	3	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0010	1047	2	0	0	2	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0011	1048	2	0	0	2	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0012	1047	2	0	0	2	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0013	1047	2	2	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0014	1047	2	2	0	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0015	1047	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0016	1048	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0017	1047	1	0	0	0	0	1	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0018	1047	1	0	1	0	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU1_chr19_51092606_51113409	0/0	c0019	1047	1	0	0	1	0	0	copy fasta	CTU1	chr19	51092606	51113409
CTU2_chr16_88701503_88720396	0/1	c0001	1547	144	15	27	92	1	8	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0002	1547	62	2	17	36	3	4	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0003	1547	55	5	15	16	5	14	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0004	1547	41	22	6	10	1	2	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	1/0	c0005	1548	38	10	7	11	1	8	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0006	1548	17	17	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0007	1548	7	0	4	0	2	1	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0008	1548	4	4	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0009	1547	4	4	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0010	1547	4	3	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0011	1547	3	1	2	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0012	1548	3	2	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0013	1547	3	0	0	0	1	2	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0014	1548	2	2	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0015	1547	2	0	1	0	1	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0016	1547	2	0	0	0	0	2	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0017	1547	2	0	0	2	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0018	1548	2	2	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0019	1547	2	2	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0020	1548	1	0	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0021	1547	1	0	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0022	1547	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0023	1547	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0024	1547	1	0	1	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0025	1548	1	0	0	0	0	1	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0026	1547	1	0	0	0	0	1	copy fasta	CTU2	chr16	88701503	88720396