JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CTU2_chr16_88701503_88720396	0/0	c0027	1548	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0028	1548	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0029	1547	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0030	1547	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0031	1547	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0032	1547	1	0	0	0	1	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0033	1547	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0034	1547	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0035	1548	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0036	1547	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0037	1547	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0038	1547	1	0	0	0	0	1	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0039	1547	1	0	0	1	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTU2_chr16_88701503_88720396	0/0	c0040	1547	1	1	0	0	0	0	copy fasta	CTU2	chr16	88701503	88720396
CTXN1_chr19_7919491_7931135	1/1	c0001	249	423	92	84	180	16	49	copy fasta	CTXN1	chr19	7919491	7931135
CTXN1_chr19_7919491_7931135	0/0	c0002	249	1	0	0	0	0	1	copy fasta	CTXN1	chr19	7919491	7931135
CTXN2_chr15_48186665_48208758	1/1	c0001	246	304	83	32	158	2	27	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	c0002	246	1	1	0	0	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	c0003	246	1	0	0	1	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	c0004	246	1	0	0	1	0	0	copy fasta	CTXN2	chr15	48186665	48208758
CTXN2_chr15_48186665_48208758	0/0	c0005	246	1	0	0	0	0	1	copy fasta	CTXN2	chr15	48186665	48208758
CTXN3_chr5_127644082_127663630	0/1	c0001	246	231	53	37	99	13	28	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	1/0	c0002	246	159	27	33	81	4	13	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	c0003	246	79	15	5	53	1	5	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	c0004	246	1	1	0	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	c0005	246	1	0	1	0	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXN3_chr5_127644082_127663630	0/0	c0006	246	1	0	0	1	0	0	copy fasta	CTXN3	chr5	127644082	127663630
CTXND1_chr15_80190481_80257213	0/0	c0001	180	198	51	22	103	4	18	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/1	c0002	180	98	20	14	47	2	14	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	1/0	c0003	180	96	19	35	26	0	15	copy fasta	CTXND1	chr15	80190481	80257213
CTXND1_chr15_80190481_80257213	0/0	c0004	180	4	0	3	0	0	1	copy fasta	CTXND1	chr15	80190481	80257213
CTXND2_chr1_150882136_150918292	1/1	c0001	168	372	90	56	164	18	42	copy fasta	CTXND2	chr1	150882136	150918292
CUBN_chr10_16818966_17134811	0/0	c0001	10872	7	2	2	2	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0002	10872	5	0	4	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0003	10872	4	0	0	0	1	3	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0004	10872	3	0	0	3	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0005	10872	3	0	0	3	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0006	10872	3	0	1	0	0	2	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0007	10872	2	0	0	2	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0008	10872	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0009	10872	2	0	1	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0010	10872	2	0	2	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0011	10872	2	0	0	1	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0012	10872	2	0	0	2	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0013	10872	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0014	10872	2	0	2	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0015	10872	2	2	0	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0016	10872	2	0	0	0	0	2	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0017	10872	2	0	0	1	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0018	10872	1	0	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811