JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
CUBN_chr10_16818966_17134811	0/0	c0069	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0070	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0071	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0072	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0073	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0074	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0075	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0076	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0077	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0078	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0079	10872	1	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0080	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0081	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0082	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0083	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0084	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0085	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0086	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0087	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0088	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0089	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0090	10872	1	0	0	0	1	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0091	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0092	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0093	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0094	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0095	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0096	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0097	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0098	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0099	10872	1	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0100	10872	1	0	0	1	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0101	10872	1	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0102	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0103	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0104	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0105	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0106	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0107	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0108	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0109	10872	1	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0110	10872	1	0	1	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0111	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0112	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0113	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0114	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0115	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0116	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0117	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811
CUBN_chr10_16818966_17134811	0/0	c0118	10872	1	1	0	0	0	copy fasta	CUBN	chr10	16818966	17134811