JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CUEDC1_chr17_57856243_57960412	0/0	c0007	1161	2	2	0	0	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	c0008	1161	1	0	0	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	c0009	1161	1	0	0	1	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	c0010	1161	1	0	0	0	0	1	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC1_chr17_57856243_57960412	0/0	c0011	1161	1	0	0	1	0	0	copy fasta	CUEDC1	chr17	57856243	57960412
CUEDC2_chr10_102418249_102437574	1/1	c0001	864	355	82	73	147	13	38	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/0	c0002	864	32	1	3	21	1	6	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/0	c0003	864	2	0	0	2	0	0	copy fasta	CUEDC2	chr10	102418249	102437574
CUEDC2_chr10_102418249_102437574	0/0	c0004	864	1	1	0	0	0	0	copy fasta	CUEDC2	chr10	102418249	102437574
CUL1_chr7_148693903_148806110	1/1	c0001	2331	318	87	70	117	10	32	copy fasta	CUL1	chr7	148693903	148806110
CUL1_chr7_148693903_148806110	0/0	c0002	2331	13	0	0	13	0	0	copy fasta	CUL1	chr7	148693903	148806110
CUL1_chr7_148693903_148806110	0/0	c0003	2331	5	5	0	0	0	0	copy fasta	CUL1	chr7	148693903	148806110
CUL1_chr7_148693903_148806110	0/0	c0004	2331	1	0	0	1	0	0	copy fasta	CUL1	chr7	148693903	148806110
CUL1_chr7_148693903_148806110	0/0	c0005	2331	1	0	0	1	0	0	copy fasta	CUL1	chr7	148693903	148806110
CUL2_chr10_35003551_35095341	1/1	c0001	2238	176	64	32	57	4	17	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	c0002	2238	71	4	13	42	5	7	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	c0003	2238	35	4	12	6	1	12	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	c0004	2238	12	9	3	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	c0005	2238	3	3	0	0	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	c0006	2238	1	0	0	0	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	c0007	2238	1	0	0	0	0	1	copy fasta	CUL2	chr10	35003551	35095341
CUL2_chr10_35003551_35095341	0/0	c0008	2238	1	0	0	1	0	0	copy fasta	CUL2	chr10	35003551	35095341
CUL3_chr2_224465150_224590363	1/1	c0001	2307	280	66	40	141	11	20	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	c0002	2307	68	1	10	43	2	12	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	c0003	2307	26	21	3	0	0	2	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	c0004	2307	4	4	0	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	c0005	2307	3	0	2	0	1	0	copy fasta	CUL3	chr2	224465150	224590363
CUL3_chr2_224465150_224590363	0/0	c0006	2307	1	0	1	0	0	0	copy fasta	CUL3	chr2	224465150	224590363
CUL4A_chr13_113204613_113272108	1/1	c0001	2280	286	73	50	120	16	25	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0002	2280	90	0	21	52	2	15	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0003	2280	4	4	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0004	2280	4	0	0	4	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0005	2280	3	3	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0006	2280	2	0	2	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0007	2280	1	0	0	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0008	2280	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0010	2280	1	0	0	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0011	2280	1	1	0	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0012	2280	1	0	1	0	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4A_chr13_113204613_113272108	0/0	c0013	2280	1	0	0	1	0	0	copy fasta	CUL4A	chr13	113204613	113272108
CUL4B_chrX_120518858_120565962	1/1	c0001	2688	273	60	48	128	11	24	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	c0002	2688	2	2	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	c0003	2687	1	0	0	1	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	c0004	2688	1	1	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL4B_chrX_120518858_120565962	0/0	c0005	2688	1	1	0	0	0	0	copy fasta	CUL4B	chrX	120518858	120565962
CUL5_chr11_108003898_108112761	0/1	c0001	2343	190	24	34	104	5	22	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	1/0	c0002	2343	108	56	19	13	5	14	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	c0003	2343	4	4	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	c0004	2343	3	3	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761