JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CUL5_chr11_108003898_108112761	0/0	c0005	2343	2	0	0	2	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	c0006	2343	2	2	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	c0007	2343	1	1	0	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	c0008	2343	1	0	1	0	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL5_chr11_108003898_108112761	0/0	c0009	2343	1	0	0	1	0	0	copy fasta	CUL5	chr11	108003898	108112761
CUL7_chr6_43032617_43058851	0/0	c0001	5097	126	22	39	41	9	15	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0002	5097	97	33	14	40	2	8	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/1	c0003	5097	9	6	0	0	0	2	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0004	5097	6	5	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0005	5097	6	0	0	6	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0006	5097	6	0	0	6	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0007	5097	6	6	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0008	5097	4	0	0	4	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0009	5097	4	0	0	4	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0010	5097	4	4	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0011	5097	2	2	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	1/0	c0012	5097	2	0	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0013	5097	2	2	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0014	5097	2	0	0	2	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0015	5097	2	0	2	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0016	5097	2	1	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0017	5097	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0018	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0019	5097	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0020	5097	1	0	0	0	0	1	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0021	5120	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0022	5097	1	0	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0023	5097	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0024	5097	1	0	1	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0025	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0026	5097	1	0	0	0	1	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0027	5097	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0028	5097	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0029	5097	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0030	5097	1	0	0	0	0	1	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0031	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0032	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0033	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0034	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0035	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0036	5097	1	1	0	0	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0037	5097	1	0	0	0	0	1	copy fasta	CUL7	chr6	43032617	43058851
CUL7_chr6_43032617_43058851	0/0	c0038	5097	1	0	0	1	0	0	copy fasta	CUL7	chr6	43032617	43058851
CUL9_chr6_43177196_43229587	1/0	c0001	7554	88	15	18	42	4	8	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0002	7554	63	3	6	47	1	6	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/1	c0003	7554	29	18	6	1	0	3	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0004	7554	9	2	2	4	0	1	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0005	7551	8	5	1	2	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0006	7554	7	2	2	2	1	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0007	7554	7	7	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587