JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CUL9_chr6_43177196_43229587	0/0	c0008	7554	6	6	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0009	7554	6	6	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0010	7554	5	5	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0011	7554	5	3	2	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0012	7554	4	2	0	0	1	1	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0013	7554	2	2	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0014	7554	2	0	0	2	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0015	7554	2	1	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0016	7554	2	2	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0017	7554	2	0	0	2	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0018	7554	2	0	0	2	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0019	7554	2	2	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0020	7554	2	2	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0021	7554	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0022	7554	1	0	0	0	0	1	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0023	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0024	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0025	7554	1	0	0	0	1	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0026	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0027	7554	1	0	0	0	0	1	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0028	7554	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0029	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0030	7554	1	0	0	0	0	1	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0031	7554	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0032	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0033	7554	1	0	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0034	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0035	7554	1	0	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0036	7554	1	0	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0037	7554	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0038	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0039	7554	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0040	7554	1	0	1	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0041	7554	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0042	7554	1	1	0	0	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUL9_chr6_43177196_43229587	0/0	c0043	7554	1	0	0	1	0	0	copy fasta	CUL9	chr6	43177196	43229587
CUTA_chr6_33411442_33423107	0/1	c0001	540	330	87	69	125	14	34	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	c0002	540	3	3	0	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	c0003	540	1	1	0	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	c0004	540	1	0	1	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	c0005	540	1	0	0	1	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	c0006	540	1	0	0	1	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	c0007	540	1	1	0	0	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTA_chr6_33411442_33423107	0/0	c0008	540	1	0	0	1	0	0	copy fasta	CUTA	chr6	33411442	33423107
CUTC_chr10_99727234_99761134	1/1	c0001	822	378	84	63	177	14	38	copy fasta	CUTC	chr10	99727234	99761134
CUTC_chr10_99727234_99761134	0/0	c0002	822	32	2	15	7	0	8	copy fasta	CUTC	chr10	99727234	99761134
CUX1_chr7_101811007_102288958	0/0	c0001	2037	38	17	7	6	1	7	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0002	2037	34	18	6	5	2	3	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	1/0	c0003	2037	24	16	6	0	0	1	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/1	c0004	2037	16	2	6	4	0	3	copy fasta	CUX1	chr7	101811007	102288958