JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CUX1_chr7_101811007_102288958	0/0	c0005	2037	9	8	0	1	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0006	2037	3	3	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0007	2037	2	0	0	0	1	1	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0008	2037	1	0	1	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0009	2037	1	0	1	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0010	2037	1	0	1	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0011	2037	1	0	0	0	0	1	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0012	2037	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101811007_102288958	0/0	c0013	2037	1	1	0	0	0	0	copy fasta	CUX1	chr7	101811007	102288958
CUX1_chr7_101812626_102263233	1/0	c0001	4518	38	24	7	3	0	3	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/1	c0002	4518	33	11	10	4	1	6	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0003	4518	24	15	3	1	0	5	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0004	4518	24	9	6	4	1	4	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0005	4518	3	3	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0006	4518	3	2	0	0	1	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0007	4518	2	0	2	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0008	4518	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0009	4518	1	0	0	0	1	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0010	4533	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0011	4518	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0012	4518	1	0	1	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0013	4518	1	0	0	1	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0014	4518	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0015	4518	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX1_chr7_101812626_102263233	0/0	c0016	4518	1	1	0	0	0	0	copy fasta	CUX1	chr7	101812626	102263233
CUX2_chr12_111029165_111355554	0/0	c0001	4461	28	19	5	0	0	4	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0002	4461	23	19	2	1	0	1	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0003	4461	14	13	0	0	0	1	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0004	4461	8	7	1	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0005	4461	4	4	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0006	4461	3	1	0	0	0	2	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0007	4461	2	1	0	1	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0008	4461	2	2	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0009	4461	2	2	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0010	4461	2	2	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0011	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0012	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0013	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0014	4461	1	0	1	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	1/0	c0015	4461	1	0	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0016	4461	1	0	1	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0017	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0018	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0019	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0020	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/1	c0021	4461	1	0	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUX2_chr12_111029165_111355554	0/0	c0022	4461	1	1	0	0	0	0	copy fasta	CUX2	chr12	111029165	111355554
CUZD1_chr10_122827158_122850857	1/1	c0001	1824	388	77	74	176	17	42	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0002	1824	11	0	0	10	0	1	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0003	1824	6	6	0	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857