JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CUZD1_chr10_122827158_122850857	0/0	c0004	1824	3	2	1	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0005	1824	3	0	0	0	0	3	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0006	1824	2	0	2	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0007	1824	2	0	0	2	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0008	1824	1	1	0	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0009	1824	1	1	0	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0010	1824	1	0	0	0	1	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0011	1824	1	0	0	1	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0012	1824	1	1	0	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0013	1824	1	0	0	1	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CUZD1_chr10_122827158_122850857	0/0	c0014	1824	1	0	1	0	0	0	copy fasta	CUZD1	chr10	122827158	122850857
CWC15_chr11_94957620_94978556	1/1	c0001	690	403	90	73	184	12	42	copy fasta	CWC15	chr11	94957620	94978556
CWC15_chr11_94957620_94978556	0/0	c0002	690	7	6	1	0	0	0	copy fasta	CWC15	chr11	94957620	94978556
CWC22_chr2_179939876_180012297	0/1	c0001	2727	174	41	24	81	8	19	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0002	2727	81	14	17	43	1	6	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0003	2727	64	4	8	48	1	3	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	1/0	c0004	2727	28	12	8	0	3	4	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0005	2727	4	4	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0006	2727	3	0	0	2	0	1	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0007	2727	3	3	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0008	2727	2	2	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0009	2727	2	0	2	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0010	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0011	2727	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0012	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0013	2727	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0014	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0015	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0016	2727	1	0	0	0	1	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0017	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0018	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0019	2751	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0020	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0021	2727	1	0	0	0	0	1	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0022	2727	1	1	0	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0023	2727	1	0	1	0	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC22_chr2_179939876_180012297	0/0	c0024	2727	1	0	0	1	0	0	copy fasta	CWC22	chr2	179939876	180012297
CWC25_chr17_38795441_38830321	0/1	c0001	1278	313	44	65	157	12	34	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	c0002	1278	62	42	1	15	0	4	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	c0003	1278	5	5	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	c0004	1278	1	0	0	1	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	c0005	1278	1	1	0	0	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC25_chr17_38795441_38830321	0/0	c0006	1278	1	0	0	1	0	0	copy fasta	CWC25	chr17	38795441	38830321
CWC27_chr5_64763930_65023750	0/0	c0001	1419	71	9	14	36	3	9	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	c0002	1419	63	16	6	26	3	12	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	1/1	c0003	1419	57	14	13	19	5	4	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	c0004	1419	34	11	4	17	1	1	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	c0005	1419	18	7	2	7	2	0	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	c0006	1419	10	6	1	3	0	0	copy fasta	CWC27	chr5	64763930	65023750
CWC27_chr5_64763930_65023750	0/0	c0007	1419	4	4	0	0	0	0	copy fasta	CWC27	chr5	64763930	65023750