JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CX3CL1_chr16_57367490_57390044	0/0	c0005	1194	1	0	1	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0006	1194	1	1	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0007	1194	1	1	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0008	1194	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0009	1194	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0010	1194	1	0	1	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0011	1194	1	1	0	0	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0012	1194	1	0	0	1	0	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CL1_chr16_57367490_57390044	0/0	c0013	1194	1	0	0	0	1	0	copy fasta	CX3CL1	chr16	57367490	57390044
CX3CR1_chr3_39258496_39285036	1/0	c0001	1068	344	79	59	152	12	41	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0002	1068	32	1	14	9	1	7	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/1	c0003	1068	21	11	6	0	1	2	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0004	1068	8	0	0	8	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0005	1068	5	0	0	5	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0006	1068	5	5	0	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0007	1068	2	0	2	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0008	1068	1	0	1	0	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0009	1068	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CX3CR1_chr3_39258496_39285036	0/0	c0010	1068	1	0	0	1	0	0	copy fasta	CX3CR1	chr3	39258496	39285036
CXADR_chr21_17508043_17575100	1/0	c0001	1098	250	40	45	113	12	39	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/1	c0002	1098	67	25	8	30	0	3	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0003	1098	9	8	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0004	1098	7	7	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0005	1098	4	4	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0006	1098	3	2	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0007	1098	3	3	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0008	1098	2	0	0	0	0	2	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0009	1098	2	2	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0010	1098	2	0	0	2	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0011	1098	1	1	0	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0012	1098	1	0	0	1	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXADR_chr21_17508043_17575100	0/0	c0013	1098	1	0	1	0	0	0	copy fasta	CXADR	chr21	17508043	17575100
CXCL10_chr4_76016118_76028497	1/1	c0001	297	423	91	74	194	16	46	copy fasta	CXCL10	chr4	76016118	76028497
CXCL10_chr4_76016118_76028497	0/0	c0002	297	1	1	0	0	0	0	copy fasta	CXCL10	chr4	76016118	76028497
CXCL11_chr4_76028682_76041070	1/1	c0001	285	421	90	65	210	10	44	copy fasta	CXCL11	chr4	76028682	76041070
CXCL11_chr4_76028682_76041070	0/0	c0002	285	1	0	1	0	0	0	copy fasta	CXCL11	chr4	76028682	76041070
CXCL12_chr10_44372067_44390097	1/1	c0001	270	441	96	72	208	17	46	copy fasta	CXCL12	chr10	44372067	44390097
CXCL12_chr10_44372067_44390097	0/0	c0002	270	1	0	0	0	1	0	copy fasta	CXCL12	chr10	44372067	44390097
CXCL13_chr4_77600820_77616834	1/1	c0001	330	366	96	72	140	14	42	copy fasta	CXCL13	chr4	77600820	77616834
CXCL14_chr5_135565679_135583991	1/1	c0001	300	358	85	72	150	15	34	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	c0002	300	43	7	4	23	1	8	copy fasta	CXCL14	chr5	135565679	135583991
CXCL14_chr5_135565679_135583991	0/0	c0003	300	1	0	0	1	0	0	copy fasta	CXCL14	chr5	135565679	135583991
CXCL16_chr17_4728533_4744928	0/1	c0001	765	204	16	39	110	8	30	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	1/0	c0002	765	148	46	23	61	5	12	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0003	765	48	15	10	20	2	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0004	765	10	2	5	0	1	2	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0005	765	7	7	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0006	765	4	4	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0007	765	3	0	0	3	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0008	765	3	1	0	0	0	2	copy fasta	CXCL16	chr17	4728533	4744928