JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CXCL16_chr17_4728533_4744928	0/0	c0009	765	2	2	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0010	765	2	2	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0011	765	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0012	765	1	0	0	0	0	1	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0013	765	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0014	765	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0015	765	1	1	0	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0016	765	1	0	0	1	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL16_chr17_4728533_4744928	0/0	c0017	765	1	0	1	0	0	0	copy fasta	CXCL16	chr17	4728533	4744928
CXCL17_chr19_42423278_42447946	1/1	c0001	360	360	84	69	151	12	42	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	c0002	360	4	3	1	0	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	c0003	360	3	0	0	3	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL17_chr19_42423278_42447946	0/0	c0004	360	1	1	0	0	0	0	copy fasta	CXCL17	chr19	42423278	42447946
CXCL1_chr4_73864393_73876308	1/1	c0001	324	252	42	38	132	9	29	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	c0002	324	184	48	34	85	5	12	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	c0003	324	7	0	0	6	0	1	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	c0004	324	2	2	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	c0005	324	1	0	0	1	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	c0006	324	1	1	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL1_chr4_73864393_73876308	0/0	c0007	324	1	1	0	0	0	0	copy fasta	CXCL1	chr4	73864393	73876308
CXCL2_chr4_74092040_74104195	1/1	c0001	324	391	92	55	188	12	42	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	c0002	324	3	0	3	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	c0003	324	2	2	0	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL2_chr4_74092040_74104195	0/0	c0004	324	2	0	2	0	0	0	copy fasta	CXCL2	chr4	74092040	74104195
CXCL3_chr4_74031589_74043689	1/1	c0001	324	346	92	57	157	14	24	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	c0002	324	34	3	1	28	0	2	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	c0003	324	2	2	0	0	0	0	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	c0004	324	1	0	0	1	0	0	copy fasta	CXCL3	chr4	74031589	74043689
CXCL3_chr4_74031589_74043689	0/0	c0005	324	1	1	0	0	0	0	copy fasta	CXCL3	chr4	74031589	74043689
CXCL5_chr4_73990642_74003677	0/1	c0001	345	320	49	55	164	13	38	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	1/0	c0002	345	68	42	13	6	3	3	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	c0003	345	1	0	0	0	0	1	copy fasta	CXCL5	chr4	73990642	74003677
CXCL5_chr4_73990642_74003677	0/0	c0004	345	1	1	0	0	0	0	copy fasta	CXCL5	chr4	73990642	74003677
CXCL6_chr4_73831678_73843760	1/1	c0001	345	443	98	78	213	18	34	copy fasta	CXCL6	chr4	73831678	73843760
CXCL6_chr4_73831678_73843760	0/0	c0002	333	1	0	0	1	0	0	copy fasta	CXCL6	chr4	73831678	73843760
CXCL8_chr4_73735569_73748716	1/1	c0001	300	388	96	54	182	14	40	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	c0002	300	1	0	0	0	1	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL8_chr4_73735569_73748716	0/0	c0003	300	1	0	0	0	1	0	copy fasta	CXCL8	chr4	73735569	73748716
CXCL9_chr4_75996275_76012509	1/1	c0001	378	435	92	72	215	12	42	copy fasta	CXCL9	chr4	75996275	76012509
CXCL9_chr4_75996275_76012509	0/0	c0002	378	1	0	0	1	0	0	copy fasta	CXCL9	chr4	75996275	76012509
CXCR1_chr2_218157841_218171962	1/1	c0001	1053	258	57	58	96	14	31	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0002	1053	58	20	13	19	0	6	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0003	1053	9	0	3	4	0	2	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0004	1053	6	6	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0005	1053	4	4	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0006	1053	2	2	0	0	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0007	1053	2	0	0	0	0	2	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0008	1053	2	1	0	1	0	0	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0009	1053	1	0	0	0	0	1	copy fasta	CXCR1	chr2	218157841	218171962
CXCR1_chr2_218157841_218171962	0/0	c0010	1053	1	0	0	0	0	1	copy fasta	CXCR1	chr2	218157841	218171962