JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CXorf51A_chrX_146809106_146819744	0/0	c0005	318	1	0	0	1	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0006	328	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0007	327	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0008	327	1	0	0	0	1	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0009	327	1	1	0	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51A_chrX_146809106_146819744	0/0	c0010	327	1	0	1	0	0	0	copy fasta	CXorf51A	chrX	146809106	146819744
CXorf51B_chrX_146804771_146815411	0/0	c0001	327	200	61	29	72	9	29	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	c0002	327	55	5	18	28	2	2	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	c0003	21	8	0	1	4	2	1	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	c0004	327	5	0	2	3	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	c0005	327	1	0	1	0	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	c0006	132	1	1	0	0	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	c0007	325	1	0	0	1	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf51B_chrX_146804771_146815411	0/0	c0008	327	1	0	1	0	0	0	copy fasta	CXorf51B	chrX	146804771	146815411
CXorf58_chrX_23903006_23944509	1/0	c0001	999	145	28	21	70	6	19	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/1	c0002	999	102	16	28	45	3	9	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	c0003	999	29	22	1	6	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	c0004	999	8	7	1	0	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	c0005	999	4	3	1	0	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	c0006	999	4	0	0	4	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	c0007	999	1	0	0	1	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	c0008	999	1	0	0	1	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf58_chrX_23903006_23944509	0/0	c0009	999	1	0	1	0	0	0	copy fasta	CXorf58	chrX	23903006	23944509
CXorf65_chrX_71098889_71111740	1/1	c0001	552	253	64	40	116	4	27	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	c0002	552	21	3	12	1	3	2	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	c0003	552	8	8	0	0	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	c0004	552	1	0	0	1	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	c0005	548	1	0	0	1	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	c0006	552	1	1	0	0	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	c0007	552	1	0	0	0	0	1	copy fasta	CXorf65	chrX	71098889	71111740
CXorf65_chrX_71098889_71111740	0/0	c0008	553	1	0	0	1	0	0	copy fasta	CXorf65	chrX	71098889	71111740
CXorf66_chrX_139950728_139970521	1/1	c0001	1086	160	20	40	64	11	23	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	c0002	1086	130	51	21	57	0	1	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	c0003	1086	2	2	0	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	c0004	1086	2	2	0	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	c0005	1086	1	1	0	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	c0006	1086	1	0	0	1	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	c0007	1086	1	0	1	0	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CXorf66_chrX_139950728_139970521	0/0	c0008	1086	1	0	0	1	0	0	copy fasta	CXorf66	chrX	139950728	139970521
CYB561A3_chr11_61343805_61366882	0/0	c0001	729	254	84	45	87	7	31	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561A3_chr11_61343805_61366882	0/0	c0002	729	2	2	0	0	0	0	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561A3_chr11_61343805_61366882	0/0	c0003	729	1	0	0	0	1	0	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561A3_chr11_61343805_61366882	0/0	c0004	729	1	0	0	0	0	1	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561A3_chr11_61343805_61366882	0/0	c0005	729	1	0	1	0	0	0	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561A3_chr11_61343805_61366882	0/0	c0006	729	1	0	0	1	0	0	copy fasta	CYB561A3	chr11	61343805	61366882
CYB561D1_chr1_109489094_109505435	1/1	c0001	690	363	97	66	144	14	40	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	c0002	690	3	0	0	3	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	c0003	690	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	c0004	690	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D1_chr1_109489094_109505435	0/0	c0005	690	1	0	0	1	0	0	copy fasta	CYB561D1	chr1	109489094	109505435