JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYB561D1_chr1_109489094_109505435	0/0	c0006	690	1	1	0	0	0	0	copy fasta	CYB561D1	chr1	109489094	109505435
CYB561D2_chr3_50345862_50359069	1/1	c0001	669	340	83	63	148	16	28	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	c0002	669	2	0	2	0	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	c0003	669	2	2	0	0	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	c0004	669	1	1	0	0	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	c0005	669	1	0	0	1	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	c0006	669	1	0	0	1	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561D2_chr3_50345862_50359069	0/0	c0007	669	1	0	1	0	0	0	copy fasta	CYB561D2	chr3	50345862	50359069
CYB561_chr17_63427304_63451306	1/1	c0001	756	379	93	79	148	16	41	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	c0002	756	4	4	0	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	c0003	756	1	1	0	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	c0004	756	1	0	1	0	0	0	copy fasta	CYB561	chr17	63427304	63451306
CYB561_chr17_63427304_63451306	0/0	c0005	756	1	0	0	0	0	1	copy fasta	CYB561	chr17	63427304	63451306
CYB5A_chr18_74245846_74296963	1/1	c0001	405	320	81	49	151	7	30	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	c0002	405	45	1	11	27	2	4	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	c0003	405	15	0	4	11	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	c0004	405	13	8	1	3	1	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	c0005	405	2	2	0	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5A_chr18_74245846_74296963	0/0	c0006	405	1	0	1	0	0	0	copy fasta	CYB5A	chr18	74245846	74296963
CYB5B_chr16_69419619_69471264	1/1	c0001	453	357	89	56	165	11	34	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	c0002	453	20	7	6	4	3	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	c0003	453	19	0	2	14	2	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	c0004	453	8	0	0	8	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	c0005	453	1	0	0	0	0	1	copy fasta	CYB5B	chr16	69419619	69471264
CYB5B_chr16_69419619_69471264	0/0	c0006	453	1	0	0	1	0	0	copy fasta	CYB5B	chr16	69419619	69471264
CYB5D1_chr17_7853003_7867282	1/1	c0001	687	270	52	48	124	13	31	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	c0002	687	119	41	17	50	0	11	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	c0003	687	46	1	10	24	5	6	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	c0004	687	3	0	3	0	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	c0005	687	1	0	0	1	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D1_chr17_7853003_7867282	0/0	c0006	687	1	0	0	1	0	0	copy fasta	CYB5D1	chr17	7853003	7867282
CYB5D2_chr17_4138197_4162697	1/1	c0001	795	349	92	63	140	18	34	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0002	795	7	0	0	7	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0003	795	5	0	0	5	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0004	795	3	0	3	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0005	795	2	2	0	0	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0006	795	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0007	795	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0008	795	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5D2_chr17_4138197_4162697	0/0	c0009	795	1	0	0	1	0	0	copy fasta	CYB5D2	chr17	4138197	4162697
CYB5R1_chr1_202956873_202972257	1/1	c0001	918	317	74	62	139	10	30	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0002	918	113	10	16	79	0	8	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0003	918	8	8	0	0	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0004	918	2	0	0	2	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0005	918	2	2	0	0	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0006	918	2	2	0	0	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0007	918	1	0	0	0	0	1	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0008	918	1	0	0	1	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0009	918	1	0	0	1	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0010	918	1	0	0	1	0	0	copy fasta	CYB5R1	chr1	202956873	202972257