JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYB5R1_chr1_202956873_202972257	0/0	c0011	918	1	0	0	0	0	1	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R1_chr1_202956873_202972257	0/0	c0012	918	1	0	0	1	0	0	copy fasta	CYB5R1	chr1	202956873	202972257
CYB5R2_chr11_7660104_7678500	0/1	c0001	831	257	34	43	143	13	23	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	1/0	c0002	831	105	15	30	42	5	12	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0003	831	29	18	2	7	0	2	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0004	831	21	8	6	5	0	2	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0005	831	13	9	3	0	0	1	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0006	831	4	0	0	3	0	1	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0007	831	4	2	0	0	0	2	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0008	831	2	2	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0009	831	2	2	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0010	831	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0011	831	1	0	1	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0012	831	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0013	831	1	0	0	0	0	1	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0014	831	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0015	831	1	1	0	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R2_chr11_7660104_7678500	0/0	c0016	831	1	0	1	0	0	0	copy fasta	CYB5R2	chr11	7660104	7678500
CYB5R3_chr22_42612840_42654392	1/1	c0001	906	298	47	65	133	8	43	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0002	906	34	31	3	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0003	906	12	3	6	0	2	1	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0004	906	4	4	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0005	906	3	3	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0006	906	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0007	906	1	1	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0008	906	1	0	0	0	0	1	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0009	906	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0010	906	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0011	906	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0012	906	1	0	0	0	0	1	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0013	906	1	1	0	0	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R3_chr22_42612840_42654392	0/0	c0014	906	1	0	0	1	0	0	copy fasta	CYB5R3	chr22	42612840	42654392
CYB5R4_chr6_83854689_83972423	1/1	c0001	1566	201	61	43	77	8	10	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0002	1566	16	16	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0003	1566	4	4	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0004	1566	2	0	0	2	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0005	1566	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0006	1566	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0007	1566	1	1	0	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0008	1566	1	0	1	0	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5R4_chr6_83854689_83972423	0/0	c0009	1566	1	0	0	1	0	0	copy fasta	CYB5R4	chr6	83854689	83972423
CYB5RL_chr1_54164651_54205030	1/0	c0001	948	258	58	45	123	10	21	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/1	c0002	948	108	19	18	48	5	17	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0003	948	10	1	4	0	1	4	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0004	948	10	9	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0005	948	4	0	2	0	0	2	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0006	948	4	3	1	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0007	948	3	0	3	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0008	948	3	0	0	0	1	2	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0009	948	3	3	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030