JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYB5RL_chr1_54164651_54205030	0/0	c0010	948	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0011	948	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0012	948	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0013	948	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0014	948	1	0	0	0	1	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0015	948	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0016	948	1	1	0	0	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0017	948	1	0	0	1	0	0	copy fasta	CYB5RL	chr1	54164651	54205030
CYB5RL_chr1_54164651_54205030	0/0	c0018	948	1	0	0	0	0	1	copy fasta	CYB5RL	chr1	54164651	54205030
CYBA_chr16_88638289_88656053	0/1	c0001	588	255	55	24	151	6	18	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0002	588	102	7	37	41	5	12	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0003	588	73	20	20	12	2	19	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0004	588	13	13	0	0	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0005	588	6	0	4	0	2	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	1/0	c0006	588	3	2	0	0	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0007	588	2	0	0	0	1	1	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0008	588	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0009	588	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0010	588	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0011	567	1	0	0	1	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0012	588	1	1	0	0	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBA_chr16_88638289_88656053	0/0	c0013	588	1	0	1	0	0	0	copy fasta	CYBA	chr16	88638289	88656053
CYBB_chrX_37775059_37818461	1/1	c0001	1713	225	55	39	94	9	26	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	c0002	1713	18	14	4	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	c0003	1713	2	0	0	2	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBB_chrX_37775059_37818461	0/0	c0004	1713	1	1	0	0	0	0	copy fasta	CYBB	chrX	37775059	37818461
CYBC1_chr17_82437586_82455752	1/1	c0001	564	319	93	56	118	16	34	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	c0002	564	95	5	22	58	0	10	copy fasta	CYBC1	chr17	82437586	82455752
CYBC1_chr17_82437586_82455752	0/0	c0003	564	2	0	0	0	2	0	copy fasta	CYBC1	chr17	82437586	82455752
CYBRD1_chr2_171517474_171563129	0/1	c0001	861	239	73	44	81	7	33	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	1/0	c0002	861	149	10	22	102	5	9	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	c0003	861	2	2	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	c0004	861	2	0	0	2	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	c0005	861	1	0	0	1	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYBRD1_chr2_171517474_171563129	0/0	c0006	861	1	1	0	0	0	0	copy fasta	CYBRD1	chr2	171517474	171563129
CYC1_chr8_144090076_144102525	0/1	c0001	978	304	63	67	129	11	33	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	c0002	978	22	14	6	0	1	1	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	1/0	c0003	978	17	15	1	0	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	c0004	978	3	0	1	0	2	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	c0005	978	2	0	2	0	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	c0006	978	2	0	0	0	2	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	c0007	978	1	0	1	0	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYC1_chr8_144090076_144102525	0/0	c0008	978	1	0	0	1	0	0	copy fasta	CYC1	chr8	144090076	144102525
CYCS_chr7_25113656_25130260	1/1	c0001	318	436	98	72	200	16	48	copy fasta	CYCS	chr7	25113656	25130260
CYFIP1_chr15_22862052_22985368	1/1	c0001	3762	105	6	19	56	4	18	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0002	3762	84	9	10	58	0	7	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0003	3762	20	15	2	0	0	3	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0004	3762	19	11	2	0	4	2	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0005	3762	18	2	5	7	2	2	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0006	3762	14	1	7	6	0	0	copy fasta	CYFIP1	chr15	22862052	22985368