JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYFIP1_chr15_22862052_22985368	0/0	c0007	3762	8	3	2	0	2	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0008	3762	7	2	2	0	2	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0009	3762	7	6	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0010	3762	6	5	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0011	3762	5	2	1	0	0	2	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0012	3762	5	2	0	0	1	2	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0013	3762	3	0	0	3	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0014	3762	3	3	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0015	3762	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0016	3762	2	0	2	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0017	3762	2	0	2	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0018	3762	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0019	3762	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0020	3762	2	2	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0021	3762	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0022	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0023	3762	1	0	0	0	0	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0024	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0025	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0026	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0027	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0028	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0029	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0030	3762	1	0	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0031	3762	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0032	3762	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0033	3762	1	0	0	0	1	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0034	3762	1	0	0	0	0	1	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0035	3762	1	0	0	1	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0036	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0037	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0038	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0039	3762	1	0	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0040	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0041	3762	1	0	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0042	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0043	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0044	3762	1	0	1	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0045	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP1_chr15_22862052_22985368	0/0	c0046	3762	1	1	0	0	0	0	copy fasta	CYFIP1	chr15	22862052	22985368
CYFIP2_chr5_157261123_157400594	1/1	c0001	3762	153	22	37	65	6	21	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0002	3762	129	54	19	42	4	10	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0003	3762	26	1	6	10	4	5	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0004	3762	6	6	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0005	3762	3	1	2	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0006	3762	2	2	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0007	3762	2	1	0	1	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0008	3762	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0009	3762	1	0	0	1	0	0	copy fasta	CYFIP2	chr5	157261123	157400594
CYFIP2_chr5_157261123_157400594	0/0	c0010	3762	1	1	0	0	0	0	copy fasta	CYFIP2	chr5	157261123	157400594