JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP11B2_chr8_142905559_142922843	0/0	c0021	1512	1	0	0	1	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0022	1512	1	0	0	0	0	1	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0023	1512	1	0	0	0	0	1	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0024	1512	1	0	0	1	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0025	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0026	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0027	1512	1	0	0	0	0	1	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0028	1512	1	0	0	1	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0029	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0030	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0031	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0032	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0033	1512	1	0	0	0	0	1	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0034	1512	1	0	0	1	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0035	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0036	1512	1	1	0	0	0	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP11B2_chr8_142905559_142922843	0/0	c0037	1512	1	0	0	0	1	0	copy fasta	CYP11B2	chr8	142905559	142922843
CYP17A1_chr10_102825531_102842413	1/1	c0001	1527	245	54	50	102	12	25	copy fasta	CYP17A1	chr10	102825531	102842413
CYP17A1_chr10_102825531_102842413	0/0	c0002	1527	183	36	32	100	6	9	copy fasta	CYP17A1	chr10	102825531	102842413
CYP17A1_chr10_102825531_102842413	0/0	c0003	1527	10	0	2	0	0	8	copy fasta	CYP17A1	chr10	102825531	102842413
CYP17A1_chr10_102825531_102842413	0/0	c0004	1527	3	3	0	0	0	0	copy fasta	CYP17A1	chr10	102825531	102842413
CYP17A1_chr10_102825531_102842413	0/0	c0005	1527	1	1	0	0	0	0	copy fasta	CYP17A1	chr10	102825531	102842413
CYP19A1_chr15_51203057_51343596	1/0	c0001	1512	138	34	37	44	4	18	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/1	c0002	1512	88	15	12	44	2	14	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0003	1512	43	9	3	25	0	6	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0004	1512	11	8	3	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0005	1512	11	11	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0006	1512	5	0	0	5	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0007	1512	4	0	0	4	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0008	1512	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0009	1512	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0010	1512	1	0	1	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0011	1512	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0012	1512	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP19A1_chr15_51203057_51343596	0/0	c0013	1512	1	1	0	0	0	0	copy fasta	CYP19A1	chr15	51203057	51343596
CYP1A1_chr15_74714542_74730528	1/1	c0001	1539	315	83	52	127	13	38	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0002	1539	62	0	11	42	2	7	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0003	1539	25	0	0	24	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0004	1539	8	7	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0005	1539	6	0	5	0	1	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0006	1539	2	0	0	2	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0007	1539	1	0	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0008	1539	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0009	1539	1	1	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0010	1539	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0011	1539	1	0	1	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0012	1539	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0013	1539	1	1	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0014	1539	1	0	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0015	1539	1	0	0	0	0	1	copy fasta	CYP1A1	chr15	74714542	74730528