JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CYP1A1_chr15_74714542_74730528	0/0	c0016	1539	1	0	1	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0017	1539	1	1	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0018	1539	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0019	1539	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0020	1539	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0021	1539	1	1	0	0	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A1_chr15_74714542_74730528	0/0	c0022	1539	1	0	0	1	0	0	copy fasta	CYP1A1	chr15	74714542	74730528
CYP1A2_chr15_74743845_74761607	0/0	c0001	1551	309	78	44	147	7	33	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	1/1	c0002	1551	85	5	24	37	9	8	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0003	1551	7	7	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0004	1551	2	0	0	2	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0005	1551	2	0	0	0	2	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0006	1551	2	0	0	0	0	2	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0007	1551	1	0	0	0	0	1	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0008	1551	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0009	1551	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0010	1551	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0011	1551	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0012	1551	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0013	1551	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0014	1551	1	1	0	0	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1A2_chr15_74743845_74761607	0/0	c0015	1551	1	0	0	1	0	0	copy fasta	CYP1A2	chr15	74743845	74761607
CYP1B1_chr2_38062509_38081151	0/0	c0001	1632	119	2	22	87	1	7	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/1	c0002	1632	98	42	17	21	8	9	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0003	1632	66	13	17	18	3	15	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0004	1632	24	0	11	2	2	9	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0005	1632	15	12	1	1	0	1	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0006	1632	11	9	2	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0007	1632	7	7	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0008	1632	5	0	0	0	0	5	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0009	1632	5	5	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0010	1632	3	2	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0011	1632	2	0	0	2	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0012	1632	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0013	1632	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0014	1632	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	1/0	c0015	1632	1	0	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0016	1632	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0017	1632	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0018	1632	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0019	1632	1	0	0	1	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0020	1632	1	0	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0021	1632	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0022	1632	1	1	0	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0023	1632	1	0	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP1B1_chr2_38062509_38081151	0/0	c0024	1632	1	0	1	0	0	0	copy fasta	CYP1B1	chr2	38062509	38081151
CYP20A1_chr2_203234018_203311026	0/0	c0001	1389	181	55	36	71	8	11	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/1	c0002	1389	109	4	32	49	6	17	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	1/0	c0003	1389	39	20	4	13	0	1	copy fasta	CYP20A1	chr2	203234018	203311026
CYP20A1_chr2_203234018_203311026	0/0	c0004	1389	2	2	0	0	0	0	copy fasta	CYP20A1	chr2	203234018	203311026