Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS7_chr15_78754206_78816464	0/0	c0117	5058	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0118	5061	1	0	1	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0119	5061	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0120	5061	1	0	0	0	0	1	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	c0121	5061	1	0	1	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS8_chr11_130399923_130433609	0/0	c0001	2667	131	9	24	84	6	8	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0002	2670	54	19	2	30	0	3	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	1/0	c0003	2670	35	2	5	16	1	10	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/1	c0004	2670	29	10	2	12	0	4	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0005	2667	24	1	9	10	1	3	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0006	2670	23	3	1	14	0	5	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0007	2670	19	14	0	5	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0008	2667	17	1	12	0	3	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0009	2673	16	10	3	0	3	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0010	2667	9	1	0	7	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0011	2673	7	0	6	0	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0012	2670	5	4	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0013	2670	5	3	1	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0014	2673	4	2	2	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0015	2667	3	0	0	0	0	3	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0016	2667	2	2	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0017	2670	2	0	0	2	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0018	2670	2	0	0	0	1	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0019	2670	2	2	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0020	2670	2	0	2	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0021	2670	2	1	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0022	2670	2	2	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0023	2673	2	0	0	0	1	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0024	2673	2	0	2	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0025	2667	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0026	2667	1	0	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0027	2667	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0028	2667	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0029	2667	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0030	2667	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0031	2667	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0032	2667	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0033	2667	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0034	2667	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0035	2667	1	0	0	0	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0036	2670	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0037	2670	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0038	2670	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0039	2670	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0040	2670	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0041	2670	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0042	2670	1	0	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0043	2670	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0044	2670	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	c0045	2670	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609